Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_D20
(1080 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 37 0.022
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.15
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.15
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.15
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.5
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.7
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 7.6
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 7.6
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 37.1 bits (82), Expect = 0.022
Identities = 49/202 (24%), Positives = 55/202 (27%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGP-RXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP AP G P P + AP P G P
Sbjct: 182 PGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDP----SGAP--PSGGPPGPFNPSGA 235
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
PP P P P P +P GA +G P P A
Sbjct: 236 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGA 295
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 296 PPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGA 355
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 356 PPSGGPPGPFDPSGAPPSGGPP 377
Score = 37.1 bits (82), Expect = 0.022
Identities = 49/202 (24%), Positives = 55/202 (27%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGP-RXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP AP G P P + AP P G P
Sbjct: 302 PGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDP----SGAP--PSGGPPGPFNPSGA 355
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
PP P P P P P GA +G P +P A
Sbjct: 356 PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGA 415
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 416 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 475
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 476 PPSGGPPGPFDPSGAPPSGGPP 497
Score = 37.1 bits (82), Expect = 0.022
Identities = 49/202 (24%), Positives = 56/202 (27%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGP-RXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP AP G P P + AP P G P
Sbjct: 332 PGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDP----SGAP--PSGGPPGPFDPSGA 385
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
PP P P P P +P GA +G P +P A
Sbjct: 386 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 445
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 446 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGA 505
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 506 PPSGGPPGPFDPSGAPPSGMPP 527
Score = 36.3 bits (80), Expect = 0.038
Identities = 49/202 (24%), Positives = 55/202 (27%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXP-APSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP AP G P P + AP P G P
Sbjct: 317 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNP----SGAP--PSGGPPGPFDPSGA 370
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
PP P P P P P GA +G P +P A
Sbjct: 371 PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 430
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 431 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGA 490
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 491 PPSGGPPGPFNPSGAPPSGGPP 512
Score = 34.3 bits (75), Expect = 0.15
Identities = 47/202 (23%), Positives = 53/202 (26%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXP-APSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP AP G P P + P G P
Sbjct: 272 PGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP------SGAQPSGGPPGPFNPSGA 325
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
PP P P P P +P GA +G P P A
Sbjct: 326 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGA 385
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 386 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 445
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 446 PPSGGPPGPFNPSGAPPSGGPP 467
Score = 32.7 bits (71), Expect = 0.47
Identities = 48/202 (23%), Positives = 53/202 (26%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXP-APSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP AP G P P + AP P G P
Sbjct: 257 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP----SGAP--PSGGPPGPFDPSGA 310
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
P P P P P P GA +G P P A
Sbjct: 311 QPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGA 370
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 371 PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 430
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 431 PPSGGPPGPFNPSGAPPSGGPP 452
Score = 32.7 bits (71), Expect = 0.47
Identities = 48/202 (23%), Positives = 53/202 (26%), Gaps = 8/202 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXP-APSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXX 588
P P + P+ PGP A G P P + AP P G P
Sbjct: 287 PGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNP----SGAP--PSGGPPGPFDPSGA 340
Query: 589 PPXXXPXXXXXPGXXPX---PRXEXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXA 759
PP P P P P P GA +G P P A
Sbjct: 341 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGA 400
Query: 760 XX-GXPXXXXXPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXL 927
G P PS P GG P +P P S G P
Sbjct: 401 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 460
Query: 928 PQG*XPXGXSXTXGPXPPKXPP 993
P P G G P PP
Sbjct: 461 PPSGGPPGPFNPSGAPPSGGPP 482
Score = 32.3 bits (70), Expect = 0.62
Identities = 43/179 (24%), Positives = 46/179 (25%), Gaps = 7/179 (3%)
Frame = +1
Query: 478 APSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXXPPXXXPXXXXXPGXXPX---PRX 648
AP G P P + AP P G P PP P P P P
Sbjct: 220 APPSGGPPGPFNP----SGAP--PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 273
Query: 649 EXSPPXXXRRAXXXTXXXXXGAXXAGRXPLXXSPRXAXX-GXPXXXXXPS---PGGGGGX 816
P GA +G P P A G P PS P GG
Sbjct: 274 PFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPG 333
Query: 817 XLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXLPQG*XPXGXSXTXGPXPPKXPP 993
P +P P S G P P P G G P PP
Sbjct: 334 PFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPP 392
Score = 31.5 bits (68), Expect = 1.1
Identities = 45/192 (23%), Positives = 52/192 (27%), Gaps = 8/192 (4%)
Frame = +1
Query: 442 PNXRXPGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXX-RXXP-PXXXPXXX 615
P+ P P P+ G P+ P L + PPG P R P P P
Sbjct: 55 PDPSSPPPAPRPSGQPPG---PQGPSDLPGPSG-APPGPPHPSGPPHRPHPHPSRRPRPT 110
Query: 616 XXPGXXPXPRXEXSPPXXXRRAXXXTXXXXX--GAXXAGRXPLXXSPRXAXX-GXPXXXX 786
P P + P GA +G P P A G P
Sbjct: 111 RLPRPSRSPHSDAPEPSAATDGFELVFGKHHSTGAPPSGGPPGPFDPSGAPPSGGPPGLF 170
Query: 787 XPS---PGGGGGXXLXPXXSPXXXXXDPPVLQSPXXVXGXXXXXXXPXXLPQG*XPXGXS 957
PS P GG P +P P S G P P P G
Sbjct: 171 DPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPF 230
Query: 958 XTXGPXPPKXPP 993
G P PP
Sbjct: 231 NPSGAPPSGGPP 242
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.15
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXPAPSRXGXASPRXPRXLLAXAP-RTPP-GXPXXRAXXRX 585
P PP S P P P+ +P G SP P AP R+PP G P +
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 357
Query: 586 XPPXXXP 606
PP P
Sbjct: 358 RPPRGGP 364
Score = 29.1 bits (62), Expect = 5.7
Identities = 39/148 (26%), Positives = 42/148 (28%), Gaps = 5/148 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRX----PGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXX 579
P PP S P R P P P P G SP PR A +P PP P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPR---AGSPPPPP-PPRGSPPT 309
Query: 580 RXXPPXXXPXXXXXPGXXPXPRXEXSPPXXXR-RAXXXTXXXXXGAXXAGRXPLXXSPRX 756
PP G P P SPP R + G+ G P PR
Sbjct: 310 GSLPPPQA-------GGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 362
Query: 757 AXXGXPXXXXXPSPGGGGGXXLXPXXSP 840
G GG P P
Sbjct: 363 GPGKSSEESSESREGPRGGPRGGPRGGP 390
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.15
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXPAPSRXGXASPRXPRXLLAXAP-RTPP-GXPXXRAXXRX 585
P PP S P P P+ +P G SP P AP R+PP G P +
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 378
Query: 586 XPPXXXP 606
PP P
Sbjct: 379 RPPRGGP 385
Score = 29.1 bits (62), Expect = 5.7
Identities = 39/148 (26%), Positives = 42/148 (28%), Gaps = 5/148 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRX----PGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXX 579
P PP S P R P P P P G SP PR A +P PP P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPR---AGSPPPPP-PPRGSPPT 330
Query: 580 RXXPPXXXPXXXXXPGXXPXPRXEXSPPXXXR-RAXXXTXXXXXGAXXAGRXPLXXSPRX 756
PP G P P SPP R + G+ G P PR
Sbjct: 331 GSLPPPQA-------GGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 383
Query: 757 AXXGXPXXXXXPSPGGGGGXXLXPXXSP 840
G GG P P
Sbjct: 384 GPGKSSEESSESREGPRGGPRGGPRGGP 411
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.15
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPGPRXXPAPSRXGXASPRXPRXLLAXAP-RTPP-GXPXXRAXXRX 585
P PP S P P P+ +P G SP P AP R+PP G P +
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 363
Query: 586 XPPXXXP 606
PP P
Sbjct: 364 RPPRGGP 370
Score = 29.1 bits (62), Expect = 5.7
Identities = 39/148 (26%), Positives = 42/148 (28%), Gaps = 5/148 (3%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRX----PGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXX 579
P PP S P R P P P P G SP PR A +P PP P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPR---AGSPPPPP-PPRGSPPT 315
Query: 580 RXXPPXXXPXXXXXPGXXPXPRXEXSPPXXXR-RAXXXTXXXXXGAXXAGRXPLXXSPRX 756
PP G P P SPP R + G+ G P PR
Sbjct: 316 GSLPPPQA-------GGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 368
Query: 757 AXXGXPXXXXXPSPGGGGGXXLXPXXSP 840
G GG P P
Sbjct: 369 GPGKSSEESSESREGPRGGPRGGPRGGP 396
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.5 bits (68), Expect = 1.1
Identities = 22/69 (31%), Positives = 25/69 (36%)
Frame = +1
Query: 457 PGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXXPPXXXPXXXXXPGXXP 636
P P P SR G +SP P PRTPP R+ PP P P P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPP--PRVPRTPP----PRSPPPRRPPMTPPSPQRRPPRTP 175
Query: 637 XPRXEXSPP 663
+PP
Sbjct: 176 PSPEPRNPP 184
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 811 PPPPPGRGXGXXGAXPXXPGXXXTEEXPXPRXXP 710
PPPPP R G+ P P P PR P
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP 156
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPG--PRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRX 585
P P + P PG PR P PS P P P PG P R
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 586 XPPXXXPXXXXXPGXXPXPRXEXSPP 663
PP P P PP
Sbjct: 326 GPPGMGGMPPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Frame = +1
Query: 412 PXPPIXXWSXPNXRXPG--PRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRX 585
P P + P PG PR P PS P P P PG P R
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 586 XPPXXXPXXXXXPGXXPXPRXEXSPP 663
PP P P PP
Sbjct: 336 GPPGMGGMPPPPPPGMRYPGGMPPPP 361
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -3
Query: 928 GGPXAXXXXXXXPXRGGGSGXPXGXSXWXXEXXRGXXXXPPPPPGRGXGXXGAXPXXPG 752
G P P GG G P G G PPP G G G G P PG
Sbjct: 162 GDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQG-GPGGPGG-PGGPG 218
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.1 bits (62), Expect = 5.7
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -3
Query: 928 GGPXAXXXXXXXPXRGGGSGXPXGXSXWXXEXXRGXXXXPPPPPGRGXGXXGAXPXXPG 752
G P P GG G P G G PPP G G G G P PG
Sbjct: 442 GDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQG-GPGGPGG-PGGPG 498
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 28.7 bits (61), Expect = 7.6
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = +1
Query: 457 PGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXXPPXXXPXXXXXPGXXP 636
PG + P G + P PR P G P P P P
Sbjct: 197 PGIKGPPGDDSIGGTGIKGPPG--PPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPP 254
Query: 637 XPRXEXSPP 663
PR E PP
Sbjct: 255 GPRGEPGPP 263
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 28.7 bits (61), Expect = 7.6
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = +1
Query: 457 PGPRXXPAPSRXGXASPRXPRXLLAXAPRTPPGXPXXRAXXRXXPPXXXPXXXXXPGXXP 636
PG + P G + P PR P G P P P P
Sbjct: 197 PGIKGPPGDDSIGGTGIKGPPG--PPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPP 254
Query: 637 XPRXEXSPP 663
PR E PP
Sbjct: 255 GPRGEPGPP 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,886
Number of Sequences: 27780
Number of extensions: 225432
Number of successful extensions: 1075
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2898039926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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