Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_D13
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 32 0.48
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 0.84
02_05_0686 - 30900748-30902167,30903442-30904742 30 1.9
01_03_0005 + 11568545-11569119,11569179-11569191 30 1.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.4
06_01_0626 + 4549661-4550947 29 5.9
07_03_1178 - 24580294-24580727,24581749-24582274 24 7.1
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P G G PPPP K PPP PPP
Sbjct: 133 PRGPGQEPPPPHVPKAAPPPPPPPPPHAPPGPPP 166
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Frame = +1
Query: 379 PPXPKXGGGXG--PPXFXKKXTXPXXXGG--------PPFFXXXKXXXXXPXGGGGXXPP 528
PP GGG G PP + P GG PP + P GGG PP
Sbjct: 338 PPPSSYGGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPP 397
Query: 529 P 531
P
Sbjct: 398 P 398
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Frame = +1
Query: 373 PXPPXPKXGGGXGPPXFXKKXTXPXXXG-GPPFFXXXKXXXXXPXGGGGXXPPPXXXXKK 549
P PP PK PP K P GPP P G PPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPP----------PPPPAKGPPPPPPPKGPS 363
Query: 550 XPPXXFXXXXKXXXXPPP 603
PP K PPP
Sbjct: 364 PPPPPPPGGKKGGPPPPP 381
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Frame = -2
Query: 603 GGGXXXXFXXXXKXXGGXFFXXXXGGGXXXPPPXGXXXXXFXXXKKGG--------PPPX 448
GGG GG GGG PPP G ++GG PPP
Sbjct: 84 GGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPP 143
Query: 447 XXXGXFFXKXXXPPPTPXFXGG 382
+F PP P + G
Sbjct: 144 NPFLPYFPFYYYSPPPPFYSSG 165
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Frame = +1
Query: 373 PXPPXPKXGGGXG----PPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPP 531
P PP P+ GG G PP P GGPP P GG G PP
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPP----------PPPGGRGLPAPP 1230
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -3
Query: 527 GGXXPPPPXGXXXXXFXXKKKGGPPXXXGXVXFXKKXGG--PXPPPLXGXGGXG 372
GG PPPP G P G GG P PPP G GG G
Sbjct: 1146 GGVPPPPPVGGLG---GPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVG 1196
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +1
Query: 382 PXPKXGGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPPXXXXKKXPP 558
P P GG PP + GGPP P GG PPP PP
Sbjct: 1174 PPPNAHGGVAPPPPPPRGHG--GVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230
>06_01_0626 + 4549661-4550947
Length = 428
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 133 QRSNLDTFLCSPKYKNASHHK 71
QR F+C PKYK+AS HK
Sbjct: 207 QRLPPPPFVCDPKYKHASPHK 227
>07_03_1178 - 24580294-24580727,24581749-24582274
Length = 319
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 505 GGGGXXPPPXXXXKKXPP 558
GGGG PP K+ PP
Sbjct: 207 GGGGGRPPANGSMKEQPP 224
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Frame = +1
Query: 370 KPXPPXPKXGGGXG--PP 417
KP PP GGG G PP
Sbjct: 197 KPLPPTASSGGGGGGRPP 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,089,022
Number of Sequences: 37544
Number of extensions: 660958
Number of successful extensions: 1518
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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