Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_D13
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.11
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.11
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.11
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.75
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.75
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.00
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.00
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.00
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.3
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +1
Query: 379 PPXPKXGGGXGPPXFXKKXTXPXXXGGPP--FFXXXKXXXXXPXGGGGXXPPPXXXXKKX 552
PP P GG PP P G PP + P G G PPP ++
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 339
Query: 553 P 555
P
Sbjct: 340 P 340
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/82 (28%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Frame = +1
Query: 373 PXPPXPKX-----GGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPPXX 537
P PP PK G G PP P G PP P G PPP
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP----PPPTGSPPPPPAGGSPPPPR 293
Query: 538 XXKKXPPXXFXXXXKXXXXPPP 603
PP PPP
Sbjct: 294 AGSPPPPPPPRGSPPTGSLPPP 315
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P G PPPP PPP PPP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +1
Query: 379 PPXPKXGGGXGPPXFXKKXTXPXXXGGPP--FFXXXKXXXXXPXGGGGXXPPPXXXXKKX 552
PP P GG PP P G PP + P G G PPP ++
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 360
Query: 553 P 555
P
Sbjct: 361 P 361
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/82 (28%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Frame = +1
Query: 373 PXPPXPKX-----GGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPPXX 537
P PP PK G G PP P G PP P G PPP
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP----PPPTGSPPPPPAGGSPPPPR 314
Query: 538 XXKKXPPXXFXXXXKXXXXPPP 603
PP PPP
Sbjct: 315 AGSPPPPPPPRGSPPTGSLPPP 336
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P G PPPP PPP PPP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +1
Query: 379 PPXPKXGGGXGPPXFXKKXTXPXXXGGPP--FFXXXKXXXXXPXGGGGXXPPPXXXXKKX 552
PP P GG PP P G PP + P G G PPP ++
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 345
Query: 553 P 555
P
Sbjct: 346 P 346
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/82 (28%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Frame = +1
Query: 373 PXPPXPKX-----GGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPPXX 537
P PP PK G G PP P G PP P G PPP
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP----PPPTGSPPPPPAGGSPPPPR 299
Query: 538 XXKKXPPXXFXXXXKXXXXPPP 603
PP PPP
Sbjct: 300 AGSPPPPPPPRGSPPTGSLPPP 321
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P G PPPP PPP PPP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.75
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Frame = +1
Query: 373 PXPPXPKXGGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPPXXXXK-- 546
P PP P G PP P G P P G GG PPP +
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 547 ----KXPPXXFXXXXKXXXXPPP 603
PP + PPP
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPP 367
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = -2
Query: 525 GXXXPPPXGXXXXXFXXXKKGGPPPXXXXGXFFXKXXXPPPTPXFXGGGXGFFXXKNP 352
G PPP F GG PP G + PPP P + G G + P
Sbjct: 315 GMPPPPPPSR----FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.75
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Frame = +1
Query: 373 PXPPXPKXGGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXXPPPXXXXK-- 546
P PP P G PP P G P P G GG PPP +
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 547 ----KXPPXXFXXXXKXXXXPPP 603
PP + PPP
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPP 377
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = -2
Query: 525 GXXXPPPXGXXXXXFXXXKKGGPPPXXXXGXFFXKXXXPPPTPXFXGGGXGFFXXKNP 352
G PPP F GG PP G + PPP P + G G + P
Sbjct: 325 GMPPPPPPSR----FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = +1
Query: 373 PXPPXPKXGGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXX-PPPXXXXKK 549
P P P GG PP P GGPP P GG PPP
Sbjct: 715 PPPGLPPITGGPPPPP--PPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 550 XPPXXFXXXXKXXXXPPP 603
PP K PPP
Sbjct: 771 PPPPPPPGGFKGGPPPPP 788
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -2
Query: 528 GGXXXPPPXGXXXXXFXXXKKGGPPPXXXXGXFFXKXXXPPPTPXFXGG 382
GG PPP G GGPPP G PPP P GG
Sbjct: 724 GGPPPPPPPGGLPPI-----TGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +2
Query: 374 PXPPPXKXGVGGGXXXFXKXXPXXXXGGGPPFFXXXXXXXXXPXGGGXXXPPPXXXKKXX 553
P PPP + GG GGPP P GG PPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 554 PPXFXXXXXXXXXXPPP 604
PP PPP
Sbjct: 771 PPPPPPPGGFKGGPPPP 787
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 530 GGGXXPPPPXGXXXXXFXXKKKGGPPXXXGXVXFXKKXGGPXPPP 396
GG PPPP G GGPP GGP PPP
Sbjct: 724 GGPPPPPPPGGLPPI------TGGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P GG PPPP PPP PPP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = +1
Query: 373 PXPPXPKXGGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXX-PPPXXXXKK 549
P P P GG PP P GGPP P GG PPP
Sbjct: 715 PPPGLPPITGGPPPPP--PPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 550 XPPXXFXXXXKXXXXPPP 603
PP K PPP
Sbjct: 771 PPPPPPPGGFKGGPPPPP 788
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -2
Query: 528 GGXXXPPPXGXXXXXFXXXKKGGPPPXXXXGXFFXKXXXPPPTPXFXGG 382
GG PPP G GGPPP G PPP P GG
Sbjct: 724 GGPPPPPPPGGLPPI-----TGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +2
Query: 374 PXPPPXKXGVGGGXXXFXKXXPXXXXGGGPPFFXXXXXXXXXPXGGGXXXPPPXXXKKXX 553
P PPP + GG GGPP P GG PPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 554 PPXFXXXXXXXXXXPPP 604
PP PPP
Sbjct: 771 PPPPPPPGGFKGGPPPP 787
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 530 GGGXXPPPPXGXXXXXFXXKKKGGPPXXXGXVXFXKKXGGPXPPP 396
GG PPPP G GGPP GGP PPP
Sbjct: 724 GGPPPPPPPGGLPPI------TGGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P GG PPPP PPP PPP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = +1
Query: 373 PXPPXPKXGGGXGPPXFXKKXTXPXXXGGPPFFXXXKXXXXXPXGGGGXX-PPPXXXXKK 549
P P P GG PP P GGPP P GG PPP
Sbjct: 298 PPPGLPPITGGPPPPP--PPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 550 XPPXXFXXXXKXXXXPPP 603
PP K PPP
Sbjct: 354 PPPPPPPGGFKGGPPPPP 371
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -2
Query: 528 GGXXXPPPXGXXXXXFXXXKKGGPPPXXXXGXFFXKXXXPPPTPXFXGG 382
GG PPP G GGPPP G PPP P GG
Sbjct: 307 GGPPPPPPPGGLPPI-----TGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +2
Query: 374 PXPPPXKXGVGGGXXXFXKXXPXXXXGGGPPFFXXXXXXXXXPXGGGXXXPPPXXXKKXX 553
P PPP + GG GGPP P GG PPP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 554 PPXFXXXXXXXXXXPPP 604
PP PPP
Sbjct: 354 PPPPPPPGGFKGGPPPP 370
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 530 GGGXXPPPPXGXXXXXFXXKKKGGPPXXXGXVXFXKKXGGPXPPP 396
GG PPPP G GGPP GGP PPP
Sbjct: 307 GGPPPPPPPGGLPPI------TGGPPPPPPPGGLPPISGGPPPPP 345
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPP 602
P GG PPPP PPP PPP
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 501 PXGGGXXPPPPXXXKKXPPPXFXXXXXXXXXPPPXF 608
P GG PPPP PPP PPP F
Sbjct: 78 PGPGGIPPPPPMFAGGIPPP--PPMMGGIPPPPPMF 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,554
Number of Sequences: 27780
Number of extensions: 396874
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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