Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D12
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   4.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -2

Query: 739 GXGGGXQXWEGGX*KXPPXFRGVXGG---NXGGXXNPPXNFGG 620
           G GGG   +EGG    P  F G  GG     GG    P  FGG
Sbjct: 225 GFGGGPGGFEGG----PGGFGGGPGGFGGGLGGFGGGPGGFGG 263


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 395 RGLAIMGFSQGPEXGPT*GXRIXXIFG 315
           RGLAI  F+ GP  GPT G  +    G
Sbjct: 224 RGLAIAFFAAGPYAGPTLGPLVGGWIG 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,149
Number of Sequences: 5004
Number of extensions: 39457
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)