Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_D11
(938 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 33 0.33
02_02_0503 + 11008475-11008793,11009983-11010140,11011863-110121... 30 2.3
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235... 30 3.1
07_01_0289 - 2099496-2100326 29 4.0
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 29 4.0
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 29 4.0
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 29 5.3
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 29 7.1
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 28 9.3
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 33.1 bits (72), Expect = 0.33
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 510 CWRFSISSAPLTSITKIDAQVRGGEXRQDYKDTTRFPLEAPSCALLFXPXRLP 668
CWR ++ T D Q + +KD + P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>02_02_0503 +
11008475-11008793,11009983-11010140,11011863-11012102,
11013502-11013757,11013846-11014057,11014413-11014453,
11014531-11014567
Length = 420
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +1
Query: 688 PFGKRGAFSXXTPVGISVRCXSFAPTLGCVPEPPRSPXTVAPLSGNXP 831
PF AF+ P+ RC S AP P PP SP A P
Sbjct: 4 PFLLLLAFALLFPLSAPPRCCSAAPASSPPPSPPPSPAAAAAAPRRTP 51
>01_06_0910 -
32922459-32922646,32922725-32922823,32923371-32923502,
32923585-32923743,32924553-32924711,32924897-32925052,
32925846-32926044
Length = 363
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 857 CLNRGWTXDGXLPDKGATVXGERGGSGTQPRVGANDXHRTEIPTGVXY 714
C++ GW G D G G G+ ++GA D H +P V Y
Sbjct: 106 CVSAGWNHSGFATDSGQLFMC---GDGSFGQLGAGDNHPRNLPFEVAY 150
>07_01_0289 - 2099496-2100326
Length = 276
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 815 KGATVXGERGGSGTQPRVGANDXHRTEIPTGV 720
+G + G RGG G R G ND T P V
Sbjct: 186 RGGNMNGARGGGGGGARAGVNDGDATAPPVAV 217
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 513 WRFSISSAPLTSITKIDAQVRGGEXRQDYKDTTRFPLEAPSCALLFXPXRLP 668
WR ++ T D Q + +KD + P + PSC L+F P P
Sbjct: 622 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 673
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 513 WRFSISSAPLTSITKIDAQVRGGEXRQDYKDTTRFPLEAPSCALLFXPXRLP 668
WR ++ T D Q + +KD + P + PSC L+F P P
Sbjct: 496 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 547
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 291 NESAN---ARGEAVCVLGALPLPRSLTRCARSFGXGE 392
+ESAN AR EAV +G +P+ L RC+R E
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSRESAQSE 470
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +1
Query: 667 RIPVRXSPF-GKRGAFSXXTPVGISVRCXSFAPTLGCVPEPPRSPXTVAPLSGNXPSXVQ 843
R+P S F GK+ + R + P V PP SP T PS Q
Sbjct: 113 RLPSIRSCFRGKKNKERKANAAAVVARRQALTPAPSLVTHPPHSPSTPEKTQAATPSATQ 172
Query: 844 P 846
P
Sbjct: 173 P 173
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 591 QDYKDTTRFPLEAPSCALLFXPXRLPDTCXXF 686
QD K T AP CALLF P L +C +
Sbjct: 53 QDPKFVTSHLQLAPHCALLFFPRELVSSCGLY 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,077,577
Number of Sequences: 37544
Number of extensions: 434891
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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