Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D11
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    29   3.6  
L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 778 PEPPRSPXTVAPLSGNXPSXVQP 846
           P PP+ P   +P++G  PS VQP
Sbjct: 709 PPPPQIPQPRSPINGGMPSIVQP 731


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 778 PEPPRSPXTVAPLSGNXPSXVQP 846
           P PP+ P   +P++G  PS VQP
Sbjct: 709 PPPPQIPQPRSPINGGMPSIVQP 731


>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 522 SISSAPLTSITKIDAQVRGGEXRQDYKDTTRFPLEAPSCALLFXPXRLPDTCXXFSLREA 701
           +I + P    T +   +   E    Y+   +F +E    ALL     +P+TC   +  E 
Sbjct: 46  TIKANPADVATILTPPLDQDEGVWKYEHLRQFCIELNGLALLLQRECIPETCQQMTATEQ 105

Query: 702 WRFL 713
           W FL
Sbjct: 106 WIFL 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,688,259
Number of Sequences: 27780
Number of extensions: 342188
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)