Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D09
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    29   1.2  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    27   4.9  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
 Frame = +1

Query: 205 KDEISQHEKEYLEILAAVKGSDKEKRXASQFIAKFFNSLPTLSEQAIEA-XFDLCEDD-- 375
           K E+S         L  +    KE+  A + +AKF +++ T+S + IE    ++ E D  
Sbjct: 98  KQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNIGTVSSKTIEVQEVEMGESDDQ 157

Query: 376 -XVAIRKQAIKDLPVLCKEHK----EHTXRIADILAQLLQSXDSTEI-NVVTXSLVTXLK 537
              ++R    K    L  + K    +      D ++QLLQ+  ST + N+ T S  +   
Sbjct: 158 LKTSLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTTSFFP 217

Query: 538 S 540
           S
Sbjct: 218 S 218


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +1

Query: 211 EISQHEKEYLEILAAVKGSDKEKRXASQFIAKFFNSLP--TLSEQAIEAXF 357
           +I + E+E+LEILA ++  +KE    S+  A    ++P   LSE+ +++ +
Sbjct: 179 DIVRSEEEFLEILAKLEQQEKEASNVSE--ASRIATIPPMILSEEEVKSQY 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,984
Number of Sequences: 5004
Number of extensions: 37155
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)