Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D08
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical pr...    64   2e-10
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical
           protein W09D6.5 protein.
          Length = 257

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = +1

Query: 175 GSVRKKMANRIGRGVPEVTDAYSKKCSCNREKATVFCRSCGFYCNGRIRLKCQQHPRVTF 354
           G  +K   +R     P +  +  K+C C+R+   V C+ CG+ C GR+++ C +HP +  
Sbjct: 150 GGPQKYSMSRPNAFAPMIAQSDEKECICDRKNTHVVCKRCGYECVGRVQVTCGKHPLILA 209

Query: 355 LLDISECPK--CHSSVFLD 405
           L D+ ECP   CHS   L+
Sbjct: 210 LNDLRECPNPVCHSVQLLE 228


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 148 TTPIVAAAAGSVRKKMANRIGRGVPEVTDAYSKKCSCNREKATVFCRSCGF 300
           + PIVA A  + ++     +   + ++T A     SC R K + F R+ GF
Sbjct: 218 SAPIVALATNTDKRDEHEEMTETIEDITVASPSSDSCPRGKQSTFLRTEGF 268


>Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical
           protein C24H11.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 438 SFYNHFLCT*FL-IKTHLYYSYNIFC 512
           +FYN FLCT  L I   +YY Y++ C
Sbjct: 95  NFYNLFLCTTNLSILLSMYYRYSLIC 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,015,015
Number of Sequences: 27780
Number of extensions: 346297
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)