Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D06
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         35   0.081
08_01_0534 - 4635122-4635380,4635716-4635837                           30   2.3  
11_06_0480 - 24081075-24081723,24083427-24084202                       29   5.3  
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859...    28   9.3  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   9.3  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    28   9.3  
02_05_0314 + 27818077-27818809,27818839-27818906,27819345-278195...    28   9.3  

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 51  SGSAAGLCQXTRVQRDRPNMWLGSRGPGATAG 146
           +  AAG CQ  R +R    +WLGS G G T G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 53  GQRSGTVPGYPRAT-RPPQHV----AGVAWARCDGRRRPATSLGLWTG 181
           GQR G  P    +  R  Q V    +GV W  C GR    +++G WTG
Sbjct: 46  GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG 93


>11_06_0480 - 24081075-24081723,24083427-24084202
          Length = 474

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 174 QRPSDVAGRRRPSHRAHATPATCWGGRVARGXPGTVP 64
           +RP  ++ RR  S  + + PA+C GGRV      +VP
Sbjct: 62  RRPHLLSLRRPSSSSSSSVPASCGGGRVDGDLTASVP 98


>07_01_1013 -
           8593690-8595006,8595275-8595928,8595951-8596065,
           8596560-8596861,8596884-8597369
          Length = 957

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 251 SPPLWICAFVWSRVVEASHVSKRGQSRGRATSLDAAGRRTGPTRPQP 111
           +PPLW+  F   +  +A +V +     GR T L+   R     RP P
Sbjct: 482 TPPLWVAMFKLLKDRDAINVFELSNPEGRKTLLEHLARE--DVRPDP 526


>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
            196685-196780,197248-197399,198683-198823,199068-199319,
            199463-199603,199686-200003,200146-200232,201025-202006,
            202091-202179,202968-203072,203155-204306,204844-205359,
            205455-205650,206299-207182
          Length = 1979

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 43   IXTRAAQRDCARXPACNATAPTCGWGRVGPVRRPAASSDVARPL 174
            + T AAQ      P C  T  T G  +  P  RP+ +  +A P+
Sbjct: 1679 VSTSAAQARAVSPPLCQTTRQTAGVSQQVPT-RPSVAGSIALPV 1721


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 147 RRPSHRAHATPATCWGGRVARGXPG---TVPLR 58
           R P  RA + PAT  G R +R  PG   +VP R
Sbjct: 224 RSPGRRADSVPATASGERASRQQPGKMVSVPAR 256


>02_05_0314 +
           27818077-27818809,27818839-27818906,27819345-27819528,
           27819700-27819800,27820479-27820586,27820728-27820946
          Length = 470

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +1

Query: 88  CNATAPTCGWGRVGPVRRPAASSDVARPLDWPRLLT*LASTTRDQTNAHIHNGGLYFEL 264
           C   + + G+  V   RR  +S   A+P D+   +  ++ST   +  A  H+G  + ++
Sbjct: 82  CYHHSRSLGFSSVSSSRRMYSSDARAKPEDYKNAMAKVSSTETSEVGATDHSGNTWIDI 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,265
Number of Sequences: 37544
Number of extensions: 263865
Number of successful extensions: 978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)