Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D03
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    32   0.64 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.5  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = -2

Query: 885 GGVFXXRXNPXGGXXFGGPGFRXGGXXGEXPGXXXXXXTRGXXXGGPRGGXPXGXXSPXG 706
           GG+        G   +GG GF  GG  G   G        G   GG  GG   G   P G
Sbjct: 168 GGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSG 227


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -3

Query: 488 PVPXAGGXXGGPIXXPPXPPGXAGXXIRXIXXQXPPLXCP 369
           P P  GG  GGP   PP PPG        I    PP   P
Sbjct: 773 PPPPPGGFKGGP--PPPPPPGMFAPMAPVIPDYLPPKKVP 810


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -3

Query: 488 PVPXAGGXXGGPIXXPPXPPGXAGXXIRXIXXQXPPLXCP 369
           P P  GG  GGP   PP PPG        I    PP   P
Sbjct: 773 PPPPPGGFKGGP--PPPPPPGMFAPMAPVIPDYLPPKKVP 810


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -3

Query: 488 PVPXAGGXXGGPIXXPPXPPGXAGXXIRXIXXQXPPLXCP 369
           P P  GG  GGP   PP PPG        I    PP   P
Sbjct: 356 PPPPPGGFKGGP--PPPPPPGMFAPMAPVIPDYLPPKKVP 393


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
 Frame = -2

Query: 885 GGVFXXRXNPXGGXX--------FGGPGFRXGGXXGEXPGXXXXXXTRGXXXGGPRGGXP 730
           GG    R  P GG          +GG G R G   G   G       RG   GG RGG  
Sbjct: 302 GGFGGGRGGPMGGRGGFGGDRGGYGGGGGRGGFDGGRGGGGGFRGGDRGGFRGGDRGGFR 361

Query: 729 XG 724
            G
Sbjct: 362 GG 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,352,301
Number of Sequences: 27780
Number of extensions: 141790
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)