Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D02
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.19 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.00 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.00 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 376 PPPPPXXFPPPXXGGPPP 429
           PPPPP  F PP    PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 0.76
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 PXXPPPXGXKXKXXPPPPP 615
           P  PPP G +    PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 0.76
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 376 PPPPPXXFPPPXXGGPPPXXKKKK 447
           PPPPP   PP     PPP    KK
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 558 PPPXXPXGXXKXXXPPPPP 614
           PPP  P G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 376  PPPPPXXFPPPXXGGPPP 429
            PPPPP   PPP    P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 560 PXXXPPXGXKXKXPPPPPPXXXXFFXXPPP 649
           P   PP       PPPPPP        PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 559 PXXPPPXGXKXKXXPPPPP 615
           P  PPP G      PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 558 PPPXXPXGXXKXXXPPPPP 614
           PPP  P G      PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +1

Query: 370 GXPPPPPXXFPPP--XXGGPPP 429
           G PPPPP   PPP     GPPP
Sbjct: 759 GGPPPPP---PPPGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 572 PPXGXKXKXPPPPPPXXXXFFXXPPP 649
           PP       PPPPPP        PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 376 PPPPPXXFPPPXXGGPPP 429
           P P P   P P  GGPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPP 763



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 377 PPPPPXXFPPXXGGAPPXXXKKKXXPXXGGXPP 475
           PPPPP    P    AP         P  GG PP
Sbjct: 733 PPPPPAVIVPTP--APAPIPVPPPAPIMGGPPP 763



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 558 PPPXXPXGXXKXXXPPPPPXXXXFFXXPPP 647
           P P  P        PPPPP        PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 368 VGXPPPPPXXFPPXXGGAPP 427
           +G PPPPP   PP   GA P
Sbjct: 758 MGGPPPPPP--PPGVAGAGP 775


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 474 GGXPPXXGXFFFFXXXGGAPPXXGGKXXGGGG 379
           GG PP  G F  F   GG     GG    GGG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -2

Query: 476 GGGXPPXGGXFFFFXXGGGPPXXGGGKXXGGGGG 375
           GGG    GG    F  GGGP   GGG    GG G
Sbjct: 241 GGGPGGFGGGLGGF--GGGPGGFGGGPGGHGGPG 272



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 476 GGGXPPXG-GXFFFFXXGGGPPXXGGGKXXGGGGGXP 369
           G G PP G G F  F   GG     GG   GG GG P
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGG--HGGFGGGP 230


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 377 PPPPPXXFPPXXGGAPPXXXKKKXXPXXGGXPP 475
           PPPPP    P  G  PP     +        PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 23.4 bits (48), Expect(2) = 1.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 593 KXPPPPPPXXXXFFXXPP 646
           K PPPPPP        PP
Sbjct: 309 KRPPPPPPPSRRNRGKPP 326



 Score = 23.0 bits (47), Expect(2) = 1.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 587 KXKXPPPPPP 616
           K + PPPPPP
Sbjct: 308 KKRPPPPPPP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,504
Number of Sequences: 5004
Number of extensions: 30024
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)