Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D01
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.13 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.90 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.90 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 763 PPPPPKKXXXPPXKXPXXPPP 825
           PPPPP     PP + P  PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 763 PPPPPKKXXXPPXKXPXXPPP 825
           PPPPP      P   P  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +1

Query: 715 PEKHQKXKXXXXVXXQPPPPPKKXXXPPXKXPXXPP-PXQPXKYXXXPXXSPP 870
           P  + +      V  QPPPPP +   PP      PP   Q   Y       PP
Sbjct: 190 PSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 763 PPPPPKKXXXPPXKXPXXPPPXQPXKYXXXPXXSPP 870
           PPPPP      P   P   PP  P      P   PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/64 (23%), Positives = 19/64 (29%)
 Frame = +3

Query: 699 PXAXXXXETSKKXTPXFXXXPTPXXPQKTXXXPLXTPLXAPPXPTXXIPXSPPXFPPGXP 878
           P      +T ++        P P  P      P   P+  PP         PP  PPG  
Sbjct: 712 PLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA 771

Query: 879 XXXP 890
              P
Sbjct: 772 GAGP 775


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 765  PXXPQKTXXXPLXTPLXAPPXPTXXIPXSPPXFPPGXPXXXP 890
            P  PQ      +  P   PP  +   P S P  P G P   P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +1

Query: 712  PPEKHQKXKXXXXVXXQPPPPPKKXXXPPXKXPXXP-PPXQP 834
            PP + Q           PPPPP     PP   P    PP  P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 763 PPPPPKKXXXPPXKXPXXPPPXQPXKYXXXPXXSPP 870
           PPP P      P K P  P    P      P  SPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/64 (25%), Positives = 20/64 (31%)
 Frame = +3

Query: 699 PXAXXXXETSKKXTPXFXXXPTPXXPQKTXXXPLXTPLXAPPXPTXXIPXSPPXFPPGXP 878
           P A        +  P     P P  P  +       P  APP P+   P + P  P   P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 879 XXXP 890
              P
Sbjct: 185 PSAP 188


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 764 PXXPPKNXXXPPXNXPXGPPXPNXXNTXFXPXF 862
           P  PP     P    P  PP P+  N  + P +
Sbjct: 161 PPFPPTQHHHPHTRPPHHPPHPHFHNNNYPPPY 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.150    0.521 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,881
Number of Sequences: 5004
Number of extensions: 21197
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)