Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_C23
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 55 1e-08
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 39 9e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.008
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.008
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.011
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 34 0.025
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.032
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.032
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.032
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.032
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 33 0.075
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.17
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 31 0.17
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.23
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 31 0.30
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 30 0.40
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.40
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.53
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.53
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 30 0.53
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.70
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.92
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 1.2
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 1.2
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 1.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 2.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 2.1
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 27 2.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 6.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 8.6
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 55.2 bits (127), Expect = 1e-08
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Frame = +1
Query: 490 YRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKD--GSGVVEFLRHEDMKYAVKKLD 657
+R++V L SWQDLKD MR+AG+ F D ++ G+GVVEF EDM+ A+ L+
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLN 155
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 166 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFED 312
+E R++VG +PP +D+ D F +G++ +D K G F FVE ED
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQI--LDCKLMNG--FGFVEVED 46
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 39.1 bits (87), Expect = 9e-04
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 127 SLAIMSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 306
S+ ++++RN +++GNLP K+I++ F KFGK+ + + ++K AFV F
Sbjct: 287 SIQNFCSNTAASRN---VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN--IAFVHF 341
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.008
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 154 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK 279
S+ + E IYVGNLP ++ D+ +LF FG + + +RK
Sbjct: 14 STKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRK 55
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 151 SSSNRNECRIYVGNLPPDI--RTKDIQDLFYKFGKVTFVDLKNRKGPP----FAFVEFED 312
S+ + C ++V NL +I T+ +++LF KFG++ L + + FV F
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 313 P 315
P
Sbjct: 472 P 472
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 163 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK---GPPFAFVEFEDP 315
R + ++VGNL P + + + F FG++ V L ++ +AFVEF++P
Sbjct: 3 RRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEP 56
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 169 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGP 285
E RIYVG L I + D++ F +FG V+ +++ N+ P
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP 42
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 34.3 bits (75), Expect = 0.025
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 166 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG 282
N +YV LP +I T++++ F FG++ + + N G
Sbjct: 174 NNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSG 212
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.9 bits (74), Expect = 0.032
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +1
Query: 505 TGLPPSGSWQDLKDHMREAGDVCFADTFKD------GSGVVEFLRHEDMKYAVKKLDDSR 666
T LP + WQDLKD R+AG V AD + G G+V ++ +A++ L ++
Sbjct: 188 TLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTD 247
Query: 667 FRSHEGEV 690
F EV
Sbjct: 248 FMGRTLEV 255
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 139 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN 273
+ G + E R+YVGNL +R ++++ + G V ++ N
Sbjct: 55 LGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN 99
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 166 NECRIYVGNLPPDIRTKDIQDLFYKFGKV 252
++C IYVGNLP +++ DLF G V
Sbjct: 279 SDC-IYVGNLPWATSDRNLLDLFTDIGSV 306
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.032
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL----KNRKGPPFAFVEFED 312
IY+GNL D+ DI +F +FG+ ++L + K FAF+++ED
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.9 bits (74), Expect = 0.032
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 166 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEF 306
N +Y+ NL +I ++ DLF +FG++T + L +N K F FV +
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 127 SLAIMSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFA 294
S+A SG + ++ + +YVG L P + + +LF G V + D R+ +A
Sbjct: 68 SVATPSGTAPTSAS---LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124
Query: 295 FVEFED 312
+V F +
Sbjct: 125 YVNFHN 130
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.9 bits (74), Expect = 0.032
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +1
Query: 172 CRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFEDPXXXXXXXX 339
C +YVGN+P ++ + + D+F + G V +D ++ + + F E+ DP
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 340 XXXXXXXXXXXLRVEF 387
LRV+F
Sbjct: 65 NLNNYDAGTRRLRVDF 80
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFED 312
IYVGNLPP ++++ LF + + + P FVEFE+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFEN 472
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKV-TF---VDLKNRKGPPFAFVEFEDPXXXXXXXXXX 345
++VGN+P D+ + + ++F + G V TF +D + G + F EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 346 XXXXXXXXXLRVEF 387
+RVEF
Sbjct: 69 NNSELGPRKIRVEF 82
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 157 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEFED 312
S R+ +YV +R +++ F FG + D+ + R PFAFVE+ED
Sbjct: 2 SRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYED 56
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 157 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFEDP 315
+N + ++VGNLP D + +Q F + G+V V D + + +AFVEF +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 184 VGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFED 312
V NL D R ++++DLF +FG + V D + + FAFV + D
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 175 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEDP 315
++ V N+ P++ K I D F GKV+ + + A ++FE P
Sbjct: 4 QVIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGETQTAKIQFERP 50
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRK---GPPFAFVEFE 309
+YVG LP K ++ F +FG V + + +NRK +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPP--FAFVEFEDP 315
+YVGN+ + +++Q F G V V + K G P FA++EF +P
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.53
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 154 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK---NRKGPPFAFVEF 306
SS +I + NLP + KD+Q L +G++ V + +R FAF EF
Sbjct: 715 SSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEF 768
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 169 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 306
E ++V N+PP+ ++ FG V ++ RKG A+V+F
Sbjct: 314 ETSVFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGT--AYVDF 357
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 487 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAD-TFKDGSGVVEFLRHEDMKYAVKK 651
E V V +PP S LK M G V + + G+ V+F+ HE ++ A+ K
Sbjct: 314 ETSVFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVDFVNHECVQLALNK 369
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 139 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 306
++GG+S N IY+GN + + +++ F +FG++ +V+ K AFV F
Sbjct: 408 VAGGASRN-----IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN--CAFVNF 456
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.1 bits (62), Expect = 0.92
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +1
Query: 169 ECRIYVGNLPPDIRTKDIQDLFYKFGKVT---FVDLKNRKGPPFAFVEFEDP 315
+ +YV N PP DI LF +G V F L+ F +V+ P
Sbjct: 665 DTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKP 716
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFED 312
++VG L ++ KD+Q F FG++ + + KG FV++ +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKG--CGFVQYSE 341
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 175 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPP--FAFVEFED 312
+++VG +P D ++ ++ F +FG+V L K G P F FV +E+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 151 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFEDP 315
S NR + ++++G L + ++D F +FG+V D + F F+ F++P
Sbjct: 156 SPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 178 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 306
++VG L + ++++ LF FG++ +V + KG FV+F
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKG--CGFVQF 345
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 175 RIYVGNLPPDIRTKDIQDLFYKFGK-VTFVDLKN---RKGPPFAFVEFEDP 315
+IY+ NLP ++ + +L FG ++F +KN F F EF++P
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNP 361
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 136 IMSGGSSSNRNECR-IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFED 312
+ S + + + C IYVGNL + K ++ F K + K + P FVEFE+
Sbjct: 589 VESNVQTDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEE 648
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 166 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK 279
N +I+ GN P++ K + + GKV V NR+
Sbjct: 4 NSIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRE 41
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 169 ECRIYVGNLPPDIRTKDIQDLFYK 240
E +I V NLP D+ +++LF K
Sbjct: 54 ESKIIVSNLPTDVTEAQVKELFVK 77
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 175 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK 270
+++V N+ P + ++ ++ F FG+V +DLK
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLK 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,029
Number of Sequences: 5004
Number of extensions: 53014
Number of successful extensions: 163
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -