Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C23
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   9.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 644 TAYFISSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 519
           ++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 189 SSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 644 TAYFISSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 519
           ++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 189 SSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 644 TAYFISSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 519
           ++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 189 SSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 487 EYRVLVTGLPPSGSWQDL 540
           EY +   GLPPS +  DL
Sbjct: 440 EYEIPAHGLPPSATRYDL 457


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 718 NSLPSHVYMSPHPHDS*I*NHLTF*QHTSYLHASKIPQH 602
           N+L ++VY +P PH      H T     S++HA+  P H
Sbjct: 402 NNLLNNVYSTPGPH------HHTMGHGHSHIHAT--PHH 432



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
 Frame = -1

Query: 706 SHVYMSPHPHDS*I----*NHLTF*QHTSYLHASKI---PQHQIH 593
           SH++ +PH H S        H T   H+SY  A +I   P H  H
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPH 468


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 220 IQDLFYKFGKVTFVDLKN 273
           I  LFY+FG +T V L +
Sbjct: 59  IVGLFYEFGLITHVKLSS 76


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 205 CPVVSFQHIYDTHFCCYC 152
           CP+  F+H   +H C  C
Sbjct: 265 CPIGKFKHEAGSHSCEAC 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,531
Number of Sequences: 438
Number of extensions: 4059
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)