Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C22
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    28   2.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.8  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   6.3  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    26   6.3  

>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -3

Query: 462 YICSSSLPDIYWMS*VNVLENKKKAFQGVILFNAAFLPRSPNKIVCLNIFWPREFTEYYL 283
           Y C S++   Y MS   V++N+  AF G I +    +P     I C+ + W  +  E   
Sbjct: 361 YNCVSAIIATYMMS---VIKNQS-AFHGAIWY----IPSIAGGIACVAMSWDHKIGELAA 412

Query: 282 VIAFNYFSFIYVI 244
           +I  + F   ++I
Sbjct: 413 IIIASNFGIPFII 425


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 40/184 (21%), Positives = 75/184 (40%)
 Frame = +1

Query: 163  YLTSPRENKHKVECEVIMADPLSLLRQYNVNKREIIERDNQIIFGEFSWPKNVKTNYLIW 342
            Y+   ++   K+E E +  +PL        +    +  D+Q +  +       K ++  W
Sbjct: 947  YIAEGKDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQAKGDWYEW 1006

Query: 343  RSGKEGSVKEYYTLECLLFILKNIHLTHPVYVRQAAAANIPPVRRPDRKELLAYLNGETA 522
            R G    +K    L  L  + ++  LTH + V     AN   V  P  +E+    NG   
Sbjct: 1007 REGLMQGIKHELNLN-LTGMQRS--LTHLMDV-----AN---VIHPYAQEIQERYNGSIT 1055

Query: 523  TCASIDKSAPLEIPTQVKRTLDNDGGESAAKKPRIEETHVQKVREQLAARLDAPKEASVT 702
            T  ++ K    E   Q   TL     E   +K ++E   V++ R  L+ + +  KE ++ 
Sbjct: 1056 TVQTLKKQK--EFANQYDSTLLAQAQEK-LEKLKVE---VERRRRLLSEKEERRKELAIK 1109

Query: 703  VDNI 714
            ++ +
Sbjct: 1110 IEQV 1113


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +1

Query: 160 FYLTSPRENKHKVECEVIMAD-PLSLLRQYNVNKREIIERDNQIIFGEF-SWPKNVKTNY 333
           F L S  +   K+E ++  AD PLS L    + K EI+E+D Q       SW + +  ++
Sbjct: 161 FDLDSLDKRIFKLESKIGYADEPLSELLNKCMEKLEIVEQDPQFWQSRIESWKQLLAKDF 220

Query: 334 LIWRSGKEGSVKEYYTLE 387
           L        S+++  TL+
Sbjct: 221 LKHHERNLCSIEKQTTLK 238


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 584 LIMMEENLLQKNLELRKLMFRRSEN 658
           LI + ENLLQ+++E  K  F+ S+N
Sbjct: 38  LISLTENLLQESVENDKNTFQNSQN 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,725
Number of Sequences: 5004
Number of extensions: 66713
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)