Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C22
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0590 - 25922905-25923008,25923637-25924594                       52   5e-07
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    32   0.71 
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342...    31   1.6  
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717...    29   6.7  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    28   8.8  
01_05_0466 - 22488026-22488427                                         28   8.8  

>03_05_0590 - 25922905-25923008,25923637-25924594
          Length = 353

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
 Frame = +1

Query: 220 DPLSLLRQYNV--NKREIIERDNQIIFG-EFSWPKNVKTNYLIWRSGKEGSVKEYYTLEC 390
           DPL++LR Y    +  +II   ++++FG E+++P N  T +   +SG+       Y L  
Sbjct: 2   DPLAVLRDYAARGDLDKIIFSGDEVLFGSEYTFPANAPTAFTNKQSGRP------YPLSA 55

Query: 391 LLFILKNIHLTHPVYVRQAAAANIPPVRRPDRKELLAYL 507
            +F+ ++  L H  +++ A    IPPV  PDRK  L +L
Sbjct: 56  AVFLAQHNDLKHTDFIQAARLRRIPPVSLPDRKTFLDFL 94


>07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,
            3895929-3896167,3896524-3896610,3896967-3897066,
            3897908-3898115,3898224-3899422
          Length = 1442

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 448  AAANIPPVRRPDRK-ELLAYLNGETATCASIDKSAPLEIPTQVKRTLDNDGGESAAKKPR 624
            A   +P VR   +K E++A  N     CA+ID++A  ++      T +ND   +A     
Sbjct: 1272 ADCEVPIVRSIQQKDEVIADKNA----CATIDQTAVDDVANNFVATTENDTDSTAELGVS 1327

Query: 625  IEETHVQKVREQLAARLDAPKEASVTVDNIKSLSEAMSVE 744
            +E    QKV E +  + D+P   S++   ++   +  S E
Sbjct: 1328 MERCIQQKV-EVIKDKSDSPLRTSISKVMLEKSDQMKSTE 1366


>01_01_0462 +
           3422352-3422439,3423057-3423241,3423333-3423530,
           3423617-3423676,3424022-3424171
          Length = 226

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 274 RDNQIIFGEFSWPKNVKTNYLIWRSGKEGSVKEYYTLECLLFILKNIHLTHPVYVRQAAA 453
           RD+  +    S+P   K   L   +GK   + E Y+ E L ++ +N   T  + +   A 
Sbjct: 23  RDSFNVLAHKSFPLENKKTGLTSANGKLCQLCEQYSTEALFYLQQNETQTEILSILHHAC 82

Query: 454 ANIPPVRR 477
           AN+ P+++
Sbjct: 83  ANVGPLKQ 90


>01_01_0911 -
           7176355-7176372,7176502-7176756,7177352-7177615,
           7177691-7177810,7177910-7178041,7178136-7178252,
           7178335-7178459,7178611-7178920,7179368-7179550,
           7179643-7179787,7180126-7181355,7181454-7181563,
           7181768-7182037,7182130-7182963
          Length = 1370

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = -1

Query: 611 AADSPPSLSSVRFT*VGISRGALLSIEAQVAVSPFRYANSSLRSGRRTGGIFAAAA 444
           AA +PPSLSS+R      +   LLS+     +S    A +S  + RR GG  AAAA
Sbjct: 67  AASAPPSLSSLR-----AAERLLLSLPVATPLSCLLLALAS--ASRRRGGAAAAAA 115


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/99 (23%), Positives = 44/99 (44%)
 Frame = +1

Query: 442 QAAAANIPPVRRPDRKELLAYLNGETATCASIDKSAPLEIPTQVKRTLDNDGGESAAKKP 621
           +A  AN+ P +R  R+E    L        ++ +    E  T ++   ++D  +     P
Sbjct: 72  RARYANLTPNQRHKRRERQNELK-------ALKRMNTDENSTAIQARRESDRMKYKNMDP 124

Query: 622 RIEETHVQKVREQLAARLDAPKEASVTVDNIKSLSEAMS 738
           + ++  + KV    A R + P E S+ V+N   ++  MS
Sbjct: 125 KEKQAKIDKVNANYALRRNTPSEYSIAVENPGYVASNMS 163


>01_05_0466 - 22488026-22488427
          Length = 133

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 457 NIPPVRRPDRKELLAYLNGETATCASIDKSAPLEIPTQVKRTLDNDGGESAAKKPRI 627
           ++PP RRP    LL  + G    CA   +     +   V+  ++    E AA+  R+
Sbjct: 17  HVPPRRRPGLVGLLRRVVGVFLCCAGASRRGASHVGGAVREQVEKASAEHAAEMERL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,984,811
Number of Sequences: 37544
Number of extensions: 398217
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)