Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C22
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical ...    67   2e-11
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    30   2.0  

>AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical
           protein F35F11.1 protein.
          Length = 535

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
 Frame = +1

Query: 220 DPLSLLRQYNVNKREIIERD------NQIIFGEFSWPKNVKTNYLIWRSGKEGSVKEYYT 381
           DPL  L+++     E   R+      + + FG++++ K+ +T+  I+     G   E+Y+
Sbjct: 2   DPLEALQKHVQRPEEFPLREVTVSGISYVAFGDYAYKKDTETSLQIY-----GKSDEFYS 56

Query: 382 LECLLFILKNIHLTHPVYVRQAAAANIPPVRRPDRKELLAYLNGETATCASIDKSAPLEI 561
           LE L+  LK  H  H VYV++AAAA +  V R DRK +  YL G+     ++        
Sbjct: 57  LESLVVFLKYSHENHGVYVKEAAAAGVRAVTRIDRKNVTEYLQGDRTDFPALMNQVN--- 113

Query: 562 PTQVKRTLDNDGGESAAKKPRIEETHVQKVREQLAARLDAPKEASVT 702
           P  +++ L +   E  AKKPR++     +  +   +  D P+E++V+
Sbjct: 114 PLSLRQLLHS--SEPEAKKPRLDGEAAGEPMD--TSTSDEPQESAVS 156


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 445  AAAANIPPVRRPDRKELLAYLNGETATCASIDKSAPLEIPTQVKRTLDNDGGESAAKKP 621
            A  A   P  +PD +     ++G T+    + K AP+E P       D+    S AKKP
Sbjct: 1081 AKKAPTKPATKPDSEAAADPVSGPTSKDPKLSKKAPVEKPKPTTDPKDDKLKPSPAKKP 1139


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
 Frame = +1

Query: 373 YYTLECLLFIL-----KNIHLTHPVYVRQAAAANIPPVRRPD----RKELLAYLNGETAT 525
           Y  +ECL  +      ++ HL HP +V + A ++  P + P+    R E++  L   T  
Sbjct: 124 YKVIECLRLLAAVAQSRSSHLEHPAWVVKLAQSS--PRQFPEAVMRRGEMVIPLQYGTNK 181

Query: 526 CASIDKSAPLEIPTQVK 576
           CAS    +P  +P Q+K
Sbjct: 182 CASQKGMSPYGLPRQIK 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,011
Number of Sequences: 27780
Number of extensions: 367766
Number of successful extensions: 913
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)