Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C21
         (1062 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +3

Query: 915  PPPPXXXFXPP--PPPXXGGGXXKKXXXXFP 1001
            PPPP   F PP  PPP    G  KK     P
Sbjct: 11   PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +3

Query: 816 PPPPXXXPPXFFXFXKKXXXXPXSPXKKKRXXXPPPPXXXFXPPPPP 956
           PPPP   PP      +             +   PPPP     PP PP
Sbjct: 240 PPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +3

Query: 816 PPPPXXXPPXFFXFXKKXXXXPXSPXKKKRXXXPPPPXXXFXPPPPP 956
           PPPP    P            P +P        PPPP      PPPP
Sbjct: 734 PPPPAVIVPT--PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,710
Number of Sequences: 5004
Number of extensions: 31161
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)