Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C20
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    69   4e-14
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    55   1e-09
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    36   5e-04
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.95 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.8  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 69.3 bits (162), Expect = 4e-14
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +1

Query: 346 MPSIAGK-YQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRT 522
           MP   GK Y+ Y +E+ DD+  A+GV  M RK+ S  SP++E++ +    T+K +S  + 
Sbjct: 1   MPDFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKN 60

Query: 523 VEHKFKLGEEYEEK-MPNSIIKSVTTITNDSEMETK 627
            E KFKLGEE+EE+ +    +KSV T+  +  ++ +
Sbjct: 61  TEIKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQ 96


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 54.8 bits (126), Expect = 1e-09
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
 Frame = +1

Query: 346 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 525
           M    GK+Q     + +++   +G   +   ++    P  E+S +GD  T  +SS   T 
Sbjct: 1   MVQFEGKFQFVSQNNFEEFAKVLGDQNLVNTVLQ-PRPSFELSKNGDEWTFTSSSGDNTY 59

Query: 526 EHKFKLGEEYEEKMPNSIIKSVTTITN--DSEMETKSVIPDTGAKCGRHYQFTDEECIVT 699
              FK+   +EE +P+   +   T+T+   +  +T++ + D+  K  R Y+F+D E +V 
Sbjct: 60  TKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDS-LKVTRLYEFSDNELLVH 118

Query: 700 LTHENASVSGKRYFRRV 750
           ++   + V   R ++RV
Sbjct: 119 ISTNKSDVKATRVYKRV 135


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +1

Query: 361 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 540
           GK+Q     + +++   +G   +   ++    P  E+S +GD  T  +SS   T    FK
Sbjct: 4   GKFQFVSQNNFEEFAKVLGDQNLVNTVLQ-PRPSFELSKNGDEWTFTSSSGDNTYTKTFK 62

Query: 541 LGEEYEEKMPNSIIKSVTTITN 606
           +   +EE +P+   +   T+T+
Sbjct: 63  MNVPFEETLPSLPDRKFQTVTS 84


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 211 LYFINCNYLSFIRD**FFDKI*IT 282
           L FIN NY++ +R   F DK+ +T
Sbjct: 621 LLFINNNYINLVRPNTFTDKVNLT 644


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 547 EEYEEKMPNSIIKSVTTITNDSEMETKSVI 636
           + YE  +P+ ++ SVT++  D EM +   I
Sbjct: 111 KSYEIWVPDIVMHSVTSVGIDLEMPSVECI 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,604
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)