Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_C15
(947 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.059
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.41
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.55
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.96
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.059
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +2
Query: 668 PPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP 817
PPPP TP P PPP PP P PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +2
Query: 659 SQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP 817
S PPPP P P P P P PP P PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.9 bits (69), Expect = 0.14
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +1
Query: 565 SPXPGGXPGXXXXTKGPXXGPXPXNRPPXGXFPXPPPPXXXXXKKNPPP 711
SP P P T P P P P G P PPPP PPP
Sbjct: 731 SPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 565 SPXPGGXPGXXXXTKGPXXGPXPXNRPPXGXFPXPPPP 678
+P P P GP P P G P PPPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.41
Identities = 24/92 (26%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Frame = +2
Query: 644 PLXGXSQXPP-PPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP* 820
P+ S PP P + P P G P P PP + PP P PP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP- 1209
Query: 821 XXTRXXXXXXXXXXXXSXPPGXXPTRXRPPPP 916
PP PT PP P
Sbjct: 1210 -VPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 30.3 bits (65), Expect = 0.41
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +2
Query: 623 GQXPXTAPLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPC 802
G P P G PPP P P G P P P P PP P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPS---EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Query: 803 SPPPP 817
+ PP
Sbjct: 1234 AKAPP 1238
Score = 29.5 bits (63), Expect = 0.72
Identities = 21/89 (23%), Positives = 21/89 (23%)
Frame = +2
Query: 668 PPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP*XXTRXXXXX 847
PP P P P P P P P PP P PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP--VPKPSVAAP 1169
Query: 848 XXXXXXXSXPPGXXPTRXRPPPPXRXXTP 934
PP P PP P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +2
Query: 644 PLXGXSQXPP-PPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPP 814
P+ S+ PP P PPP P P P K PP P S P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/92 (23%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Frame = +2
Query: 644 PLXGXSQXPP-PPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP* 820
P+ S PP P + P P P P P P PP P PP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP-- 1141
Query: 821 XXTRXXXXXXXXXXXXSXPPGXXPTRXRPPPP 916
+ PP P+ PP P
Sbjct: 1142 -VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +2
Query: 659 SQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP 817
S PP P S + P G P P P P PP P PP
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = +2
Query: 632 PXTAPLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPP 811
P AP G PP P + PP P P PP PP P +
Sbjct: 1170 PVPAPSSGI---PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 812 PP 817
PP
Sbjct: 1227 PP 1228
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.55
Identities = 25/89 (28%), Positives = 27/89 (30%)
Frame = +2
Query: 668 PPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP*XXTRXXXXX 847
PP P T P PPP P P K PP P S PPP +
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPI---PSKAPPI--PSSLPPP---AQPAAPV 181
Query: 848 XXXXXXXSXPPGXXPTRXRPPPPXRXXTP 934
S P P + PPP P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 29.1 bits (62), Expect = 0.96
Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +2
Query: 632 PXTAPLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPP 811
P +AP P P PP PPP P P + P P PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 812 --PP 817
PP
Sbjct: 200 KVPP 203
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +2
Query: 689 SXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPP 814
S PP P P P PP + P P S PP
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.96
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 613 PXXGPXPXNRPPXGXFPXPPPPXXXXXKKNPPPXXXG 723
P P P P P PPPP +KN P G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 643 PPXGXFPXPPPPXXXXXKKNPPPXXXG 723
PP P PPPP + PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +2
Query: 638 TAPLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPP 811
T P+ S PP TPPP PPP P PP PP S P
Sbjct: 1689 TPPVRPQSAAPPQ----MSAPTPPPPPMSVPPPPS-APPMPAGPPSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 674 PPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP 817
PP P PPP P PP P P +PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP---PSAPPPP 1734
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +2
Query: 668 PPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNP 784
PPPP + PP G P P P NP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/95 (23%), Positives = 26/95 (27%)
Frame = +2
Query: 632 PXTAPLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPP 811
P + P + P + PPP G P P P NP PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPN-SPPRPIAPVSMNPAINSTSKPP 291
Query: 812 PP*XXTRXXXXXXXXXXXXSXPPGXXPTRXRPPPP 916
P +R PP R R PP
Sbjct: 292 LPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Score = 27.5 bits (58), Expect = 2.9
Identities = 26/95 (27%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Frame = +2
Query: 644 PLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP*X 823
PL S + KK PPP PPP PP N PPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPP----PPPSR---RNRGKPPIGNGSSNSSLPPPPPPP 343
Query: 824 XTRXXXXXXXXXXXXS----XPPGXXPTRXRPPPP 916
+ S PP P+ R PPP
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Frame = +2
Query: 641 APLXGXSQXPPPPXXXSXKKTPPPXXGGXPPPXX*XXPXXXXPPXKN-------PPXXXP 799
A L + PPPP S + P G P PP N PP
Sbjct: 302 AALAANKKRPPPPPPPSRRNRGKPPIGNGSSNS--SLPPPPPPPRSNAAGSIPLPPQGRS 359
Query: 800 CSPPPP 817
PPPP
Sbjct: 360 APPPPP 365
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = +2
Query: 626 QXPXTAPLXGXSQXPPPPXXXSXKKTPP-PXXGGXPPPXX*XXPXXXXPPXKNPPXXXPC 802
Q P + S P PP + P P G P P PP P
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 803 SPP 811
+PP
Sbjct: 435 APP 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.150 0.508
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,956
Number of Sequences: 5004
Number of extensions: 21863
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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