Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C15
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.43 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +1

Query: 565 SPXPGGXPGXXXXTKGPXXG--PXPXNRPPXGXFPXPPP 675
           S  PG  P      + P  G  P P   PP G  P  PP
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 707 PPXXGGXPPPXX*XXPXXXXPPXKNPPXXXPCSPPPP 817
           PP  G   PP          PP  N P   P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/48 (27%), Positives = 13/48 (27%)
 Frame = +1

Query: 625 PXPXNRPPXGXFPXPPPPXXXXXKKNPPPXXXGXXPPGXXTXPXXXXP 768
           P     PP    P PP P        PP        P   T P    P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 733 GGXXPXXRGGGFFXGXXSGGGG 668
           GG      GG    G  +GGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGG 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.150    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,668
Number of Sequences: 438
Number of extensions: 6187
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)