Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C14
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.30 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   4.8  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   8.4  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   8.4  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 158 RNMVATTFLLFIEDYSRKSLGYNFVCLYSHLWIXNSN 48
           +N+V+  FL  +  Y+R++ GY+F  ++S +W  N +
Sbjct: 430 QNLVSRVFLEQVMIYTRQNAGYDFWQVHSTIWANNGD 466


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 257 LLNREYYRPWRHLAAAARDVGSSIKVDKD 343
           LLN  Y + W+ L++  + +  S   DKD
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKD 386


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 83  IQSYIQAIFGSNLQ*KARMSLLP-YFFDDFGSRRPRRLLDQHFGLALTPDDLLSVAAGPL 259
           I S + A+F  N++  A++  LP   FD    +   R    +       D+LL   A PL
Sbjct: 168 ISSLLSAVFEINME-NAKIRHLPSVIFDGLIEKNKDRPYHINLSCKRAYDELLPRIAVPL 226

Query: 260 LNREYY 277
           L  EY+
Sbjct: 227 LPHEYH 232


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 152 MVATTFLL--FIEDYSRKSLGYNFVCLYSHLWIXNSNIKILRIPYSE 18
           ++AT+  L  FI  Y R   GY F C+   +WI      + R P+ +
Sbjct: 113 ILATSLALASFISAYIRSRYGYRFFCI---IWIFIDCFLLTRDPFEK 156


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 379 AKCCTSKFTLELILVDFDAGTNISSRCSE 293
           +KC T    LEL +V F  G +   RC E
Sbjct: 869 SKCSTCGIDLELPMVHFRCGHSYHQRCVE 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,704
Number of Sequences: 5004
Number of extensions: 47158
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)