Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C14
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41109-5|AAB37035.1|  149|Caenorhabditis elegans Heat shock prot...    35   0.092
U41109-4|AAQ62453.1|  148|Caenorhabditis elegans Heat shock prot...    35   0.092
M14334-1|AAA28070.1|  144|Caenorhabditis elegans protein ( C.ele...    34   0.16 
K03273-3|AAA28067.1|  144|Caenorhabditis elegans heat shock prot...    34   0.16 
X01576-1|CAA25731.1|  135|Caenorhabditis elegans C-terminal frag...    32   0.65 
U64837-7|AAB04841.1|  143|Caenorhabditis elegans Heat shock prot...    32   0.65 
U64837-6|AAB04840.1|  143|Caenorhabditis elegans Heat shock prot...    32   0.65 
K03273-2|AAA28069.1|  143|Caenorhabditis elegans heat shock prot...    32   0.65 
AC006774-2|AAF60616.1|  143|Caenorhabditis elegans Heat shock pr...    32   0.65 
X01577-1|CAA25732.1|   97|Caenorhabditis elegans protein ( C. el...    31   0.85 
AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical ...    31   1.1  
L15188-10|AAA27953.1|  110|Caenorhabditis elegans Heat shock pro...    29   4.5  
Z81125-9|CAL64006.1|  112|Caenorhabditis elegans Hypothetical pr...    29   6.0  
EF035034-1|ABK34454.1|  112|Caenorhabditis elegans heat-shock pr...    29   6.0  

>U41109-5|AAB37035.1|  149|Caenorhabditis elegans Heat shock protein
           protein 17,isoform a protein.
          Length = 149

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 440 EKKDEHGYISRQFVRRYALPEGAAPXTV 523
           EK D++G + R FVR+Y LP G  P  +
Sbjct: 88  EKTDKYGQVERHFVRKYNLPTGVRPEQI 115


>U41109-4|AAQ62453.1|  148|Caenorhabditis elegans Heat shock protein
           protein 17,isoform b protein.
          Length = 148

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 440 EKKDEHGYISRQFVRRYALPEGAAPXTV 523
           EK D++G + R FVR+Y LP G  P  +
Sbjct: 87  EKTDKYGQVERHFVRKYNLPTGVRPEQI 114


>M14334-1|AAA28070.1|  144|Caenorhabditis elegans protein (
           C.elegans heat shockprotein genes 16-41 and 16-2,
           complete cds, flanked byCeRep16 repetitive elements. ).
          Length = 144

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 311 DVGSSIKVDKDKFQGEFRCAALRAXR-DLCEDXRRVHRSGXQXEEKKDEHGYISRQFVRR 487
           ++G  I  D+ KF  +   +  +     +  D R +   G Q  E K EHGY+ R F + 
Sbjct: 43  NIGEQIVNDESKFSVQLDVSHFKPENLKIKLDGRELKIEGIQ--ETKSEHGYLKRSFSKM 100

Query: 488 YALPEGA 508
             LPE A
Sbjct: 101 ILLPEDA 107


>K03273-3|AAA28067.1|  144|Caenorhabditis elegans heat shock protein
           16-48a protein.
          Length = 144

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 311 DVGSSIKVDKDKFQGEFRCAALRAXRDLCE-DXRRVHRSGXQXEEKKDEHGYISRQFVRR 487
           ++G  I  D+ KF  +   +  +      E D R +   G Q  EKK EHGY  R F + 
Sbjct: 43  NIGEQIVNDESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQ--EKKSEHGYSKRSFSKM 100

Query: 488 YALPE 502
             LPE
Sbjct: 101 ILLPE 105


>X01576-1|CAA25731.1|  135|Caenorhabditis elegans C-terminal
           fragment of hsp 16-48 protein.
          Length = 135

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 272 YYRPWRHLAAAARDVGSSIKVDKDKFQGEFRCAALRAXRDLCE-DXRRVHRSGXQXEEKK 448
           Y+R   H +    D    I  D+ KF  +   +  +      E D R +   G Q  EKK
Sbjct: 21  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQ--EKK 78

Query: 449 DEHGYISRQFVRRYALPE 502
            EHGY  R F +   LPE
Sbjct: 79  SEHGYSKRSFSKMILLPE 96


>U64837-7|AAB04841.1|  143|Caenorhabditis elegans Heat shock protein
           protein 16.49 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 272 YYRPWRHLAAAARDVGSSIKVDKDKFQGEFRCAALRAXRDLCE-DXRRVHRSGXQXEEKK 448
           Y+R   H +    D    I  D+ KF  +   +  +      E D R +   G Q  EKK
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQ--EKK 86

Query: 449 DEHGYISRQFVRRYALPE 502
            EHGY  R F +   LPE
Sbjct: 87  SEHGYSKRSFSKMILLPE 104


>U64837-6|AAB04840.1|  143|Caenorhabditis elegans Heat shock protein
           protein 16.48 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 272 YYRPWRHLAAAARDVGSSIKVDKDKFQGEFRCAALRAXRDLCE-DXRRVHRSGXQXEEKK 448
           Y+R   H +    D    I  D+ KF  +   +  +      E D R +   G Q  EKK
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQ--EKK 86

Query: 449 DEHGYISRQFVRRYALPE 502
            EHGY  R F +   LPE
Sbjct: 87  SEHGYSKRSFSKMILLPE 104


>K03273-2|AAA28069.1|  143|Caenorhabditis elegans heat shock protein
           16-48 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 272 YYRPWRHLAAAARDVGSSIKVDKDKFQGEFRCAALRAXRDLCE-DXRRVHRSGXQXEEKK 448
           Y+R   H +    D    I  D+ KF  +   +  +      E D R +   G Q  EKK
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQ--EKK 86

Query: 449 DEHGYISRQFVRRYALPE 502
            EHGY  R F +   LPE
Sbjct: 87  SEHGYSKRSFSKMILLPE 104


>AC006774-2|AAF60616.1|  143|Caenorhabditis elegans Heat shock
           protein protein 16.41 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +2

Query: 272 YYRPWRHLAAAARDVGSSIKVDKDKFQGEFRCAALRAXR-DLCEDXRRVHRSGXQXEEKK 448
           Y+R   H +    D    I  D+ KF  +   +  +     +  D R +   G Q  E K
Sbjct: 29  YWRNADHNSFNFSDNIGEIVNDESKFSVQLDVSHFKPENLKIKLDGRELKIEGIQ--ETK 86

Query: 449 DEHGYISRQFVRRYALPEGA 508
            EHGY+ R F +   LPE A
Sbjct: 87  SEHGYLKRSFSKMILLPEDA 106


>X01577-1|CAA25732.1|   97|Caenorhabditis elegans protein ( C.
           elegans mRNA 3'-regionfor heat shock protein hsp 16-41
           (exon 2).somal genes.).
          Length = 97

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 401 DXRRVHRSGXQXEEKKDEHGYISRQFVRRYALPEGA 508
           D R +   G Q  E K EHGY+ R F +   LPE A
Sbjct: 27  DGRELKIEGIQ--ETKSEHGYLKRSFSKMILLPEDA 60


>AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.6 protein.
          Length = 180

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 440 EKKDEHGYISRQFVRRYALPEGAAPXTV 523
           EK+D +G I   F RR+ LP+  AP +V
Sbjct: 112 EKEDTYGTIESTFKRRFPLPKAVAPESV 139


>L15188-10|AAA27953.1|  110|Caenorhabditis elegans Heat shock
           protein protein 12.2 protein.
          Length = 110

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 333 STRISSKVNLDVQHFAPXEISVKTXDGYIVVEXSXKRRKTSTG 461
           +T+   +V LDVQ F P EI VK     +++    + R  + G
Sbjct: 29  NTKEKFEVGLDVQFFTPKEIEVKVSGQELLIHCRHETRSDNHG 71


>Z81125-9|CAL64006.1|  112|Caenorhabditis elegans Hypothetical
           protein T22A3.2b protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 413 VHRSGXQXEEKKDEHGYISRQFVRRYALPEGAAPXTV 523
           +H      + +  E+G ++R+  R Y LPE   P TV
Sbjct: 59  IHLRHDLLQNRPTEYGIVNREVHRTYKLPEDVDPSTV 95


>EF035034-1|ABK34454.1|  112|Caenorhabditis elegans heat-shock
           protein 12.1 protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 413 VHRSGXQXEEKKDEHGYISRQFVRRYALPEGAAPXTV 523
           +H      + +  E+G ++R+  R Y LPE   P TV
Sbjct: 59  IHLRHDLLQNRPTEYGIVNREVHRTYKLPEDVDPSTV 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,747
Number of Sequences: 27780
Number of extensions: 271268
Number of successful extensions: 606
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)