Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C12
         (1092 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.49 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 871 PPPPXXXXXFXXXXXXPPPPPP 806
           PPPP     F      PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 870 PPPXXXXXXFXXXXXXPPPPPP 805
           PPP      F      PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 871 PPPPXXXXXFXXXXXXPPPPPP 806
           PPPP            PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 875 PPPPPXXXXXFXXXXXXXPPPPP 807
           PPPPP             PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 631 GPPPXXXPPP 602
           GPPP   PPP
Sbjct: 774 GPPPPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 9.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 634 GGPPPXXXPP 605
           GGPPP   PP
Sbjct: 759 GGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.155    0.532 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,187
Number of Sequences: 5004
Number of extensions: 26826
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)