Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C11
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical ...    31   0.77 
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    30   2.3  

>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 103 YIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQ 276
           Y    K  V   C++  +   +  D  +F KDI+   K+ HKTLE   + + K +D Q
Sbjct: 572 YFKNNKPKVFLECVSRLRKTAI--DGENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQ 627


>AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK973.11 protein.
          Length = 447

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 214 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 321
           +EFHKT E+    L K  D  + F  AW DGS+   Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 157 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 312
           G     +A ++F D++HHT  F    T +     +   +D  D  K W   SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,673
Number of Sequences: 27780
Number of extensions: 192493
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)