Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_C10
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.024
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 6.4
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 6.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 6.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = -3
Query: 893 GGGXNPPXXXGGXRGXFSXXPXGEKXGAXGGFXGGXXRXFFFPG--GXXPPTXGGGFFXF 720
GG PP GG G G G GGF GG PG G P GGG F
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 719 XXGGG 705
G G
Sbjct: 255 GGGPG 259
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 580 GGXXPXPPPPPXGXGXXLGGGGGGXXXXXPXXPGGG 473
GG PPP P G G G GG G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 893 GGGXNPPXXXGGXRGXFSXXPXGEKXGAXGGFXGGXXRXFFFPGGXXPP 747
GG P G G F P G G GGF GG PGG P
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGF-GGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -3
Query: 863 GGXRGXFSXXPXGEKXGAXGGFXGGXXRXFFFPGGXXPPTXGGG 732
GG G F P G G GGF GG PGG G G
Sbjct: 227 GGGPGGFEGGPGGF-GGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.024
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 471 PPPPGXXGXXXXXPPPPPP 527
PPPPG G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 471 PPPPGXXGXXXXXPPPPPPKXXPXPXGGGGGXGXXPP 581
PPPP G PPPPPP P P GG P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795
Score = 29.9 bits (64), Expect = 0.52
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 587 PXXGGXTPPPPPPXXXXXXFGGGGGGXPXXXPXXP 483
P GG PPPPPP G G G P P P
Sbjct: 756 PIMGGPPPPPPPP-------GVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 473 PPPXGXGGXXXXPPPPPPQXXPXPXGGGGGXGXXP 577
PPP G G PPPPPP P GG P
Sbjct: 765 PPPPGVAGAG--PPPPPP--PPPAVSAGGSRYYAP 795
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 465 KXPPPPGXXGXXXXXPPPPPPKXXPXPXGGGGGXGXXPP 581
K PPPP P P P P P GG PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 472 PPPXGXXGXXXGXPPPPPPXKXXXXXGGG 558
PPP G PPPPP GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -3
Query: 587 PXXGGXTPPPPPPXXXXXXFGG 522
P G PPPPPP GG
Sbjct: 768 PGVAGAGPPPPPPPPPAVSAGG 789
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 471 PPPPGXXGXXXXXPPPPP 524
PPPPG PPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 471 PPPPGXXGXXXXXPPPPPP 527
PPPP G PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 471 PPPPGXXGXXXXXPPPPPP 527
PPPP PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 471 PPPPGXXGXXXXXPPPPPP 527
PPPP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 785 SXPPXTPXXPPXFPPXGXXKKXPSXPPXG 871
S PP P PP P + P PP G
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 569 TPPPPPP 549
TPPPPPP
Sbjct: 906 TPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 2.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3
Query: 566 PPPPPPXXXXXXFGGG 519
PPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 474 PPPGXXGXXXXXPPPPPPKXXPXPXGGGGGXGXXPPXG 587
PP G PPPPPP P G PP G
Sbjct: 325 PPIGNGSSNSSLPPPPPP-----PRSNAAGSIPLPPQG 357
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 475 PPXGXXGXXXGXPPPPPPXK 534
PP G PPPPPP +
Sbjct: 325 PPIGNGSSNSSLPPPPPPPR 344
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 543 PXGGGGGXGXXPPXGGXXFXP 605
P G GGG G P GG F P
Sbjct: 80 PGGPGGGPGEGFPGGGFGFDP 100
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 479 PXGXGGXXXXPPPPPPQXXPXP 544
P G GG PPPPP P
Sbjct: 280 PMGPGGAPLVPPPPPGMVMASP 301
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 516 PPPPKXXPXPXGGGGGXGXXPPXGGXXFXPKXXGXXKKKXFS 641
PPPP P G GG P G F G + FS
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFS 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,222
Number of Sequences: 5004
Number of extensions: 27193
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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