Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C09
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0368 + 15004949-15005659,15005789-15005848                       29   3.8  
02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108           29   5.0  
02_01_0062 - 448105-448145,448780-448866,449664-449790                 28   6.6  

>04_03_0368 + 15004949-15005659,15005789-15005848
          Length = 256

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +2

Query: 242 PPPXXGGXXPRGEKTPXXGFFXXPPGGVXFXKXPXLXGXPPXPXXXXXGK 391
           P P  G   PR  +    G    PPG   +   P L   PP P     GK
Sbjct: 135 PLPPTGFQHPRRRRLLTAGRQIWPPGSRIWPPAPFLASRPPMPPSLASGK 184


>02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108
          Length = 139

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = -2

Query: 298 PXXXGFFPPGXXPPXXGGXGPPFFXXXNFXXPPKTGXXGLVWKXPXGXFXN 146
           P    FFPP   PP  GG G PF     +      G  G V + P     N
Sbjct: 37  PPPPPFFPPQWAPPVAGGGG-PFAGGGGYGSGAGGGGPGGVHEPPISYVYN 86


>02_01_0062 - 448105-448145,448780-448866,449664-449790
          Length = 84

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 298 PXXXGFFPPGXXPPXXGGXGP 236
           P    FFPP   PP  GG GP
Sbjct: 20  PPPPPFFPPQWAPPVPGGGGP 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.144    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,520
Number of Sequences: 37544
Number of extensions: 207104
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)