Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C09
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S80905-1|AAB50686.1|  382|Homo sapiens Con1 protein.                   30   7.4  
K03208-1|AAA60189.1|  251|Homo sapiens PRB2 protein.                   30   9.8  

>S80905-1|AAB50686.1|  382|Homo sapiens Con1 protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
 Frame = +2

Query: 116 GQXKXXPPSXIXKXXXGXFPNQTXXPGFWGXXKIXXXKKXGAP--PPXXGGXXPRGEKTP 289
           G+ +  PP    K      P +   P   G          G P  PP  GG  P+G   P
Sbjct: 42  GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 101

Query: 290 XXGFFXXPPGGVXFXKXPXLXGXPPXPXXXXXGKKK 397
                  PP G    + P   G P  P      K +
Sbjct: 102 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSR 137


>K03208-1|AAA60189.1|  251|Homo sapiens PRB2 protein.
          Length = 251

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
 Frame = +2

Query: 116 GQXKXXPPSXIXKXXXGXFPNQTXXPGFWGXXKIXXXKKX-GAP--PPXXGGXXPRGEKT 286
           G+ +  PP    K      P +   P   G  K    +   G P  PP  GG  P+G   
Sbjct: 96  GKPQGPPPQGDNKSQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP 155

Query: 287 PXXGFFXXPPGGVXFXKXPXLXGXPPXPXXXXXGKKK 397
           P       PP G    + P   G P  P      K +
Sbjct: 156 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSR 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.317    0.144    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,727,093
Number of Sequences: 237096
Number of extensions: 1376398
Number of successful extensions: 1907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)