Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C09
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -2

Query: 322 PPGGXXKKPXXXGFFPPGXXPPXXGGXGPPFFXXX-NFXXPPKTGXXGLVWKXPXGXFXN 146
           PP G    P    F  P   P   GG  PP      NF  PP++G  G     P      
Sbjct: 343 PPQGSFGAPPPQQFHAPS--PQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAP 400

Query: 145 XGRGG 131
            G GG
Sbjct: 401 QGPGG 405



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
 Frame = +2

Query: 227 KKXGAPPPXXG-----GXXPRG--EKTPXXGFFXXPPGGVXFXKXPXLXGXPPXPXXXXX 385
           ++ GAPPP        G  P+G  +  P  G F  PP        P   G PP P     
Sbjct: 316 QQFGAPPPQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAP 375

Query: 386 G 388
           G
Sbjct: 376 G 376


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 183 PLFPVFGGXX-KFXXQKXGGPXPPFXGGXXPGGKKPXXXGFFXXPPGG 323
           P++P FG    +   Q+   P PP      PGG  P   G+   PP G
Sbjct: 179 PVYPPFGQPAPQMSGQRMPYPYPPQGMPGYPGGPPPPPHGYEGYPPPG 226


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/67 (29%), Positives = 22/67 (32%)
 Frame = +2

Query: 164  GXFPNQTXXPGFWGXXKIXXXKKXGAPPPXXGGXXPRGEKTPXXGFFXXPPGGVXFXKXP 343
            G FP +   PG  G  +          PP  G   P G      G    P GG      P
Sbjct: 1528 GGFPQRGGGPGM-GPSQYYHDSPQNRGPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPP 1586

Query: 344  XLXGXPP 364
             L G PP
Sbjct: 1587 PLMGGPP 1593


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = -2

Query: 274 PGXXPPXXGGXGPPFFXXXNFXXPPKTGXXGLVWKXPXGXFXNXGRGG 131
           PG   P  GG         N    P  G  G+  + P G F N GRGG
Sbjct: 498 PGGVEPLMGGPPYQMSGQINQMGGPIRGGFGMQQQQPMGYF-NSGRGG 544


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = -2

Query: 274 PGXXPPXXGGXGPPFFXXXNFXXPPKTGXXGLVWKXPXGXFXNXGRGG 131
           PG   P  GG         N    P  G  G+  + P G F N GRGG
Sbjct: 495 PGGVEPLMGGPPYQMSGQINQMGGPIRGGFGMQQQQPMGYF-NSGRGG 541


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +2

Query: 239 APPPXXGGXXPRGEKTPXXGFFXXPPGGVXFXKXPXLXGXPPXPXXXXXG 388
           APP    G  P G+  P   FF  PP    F   P   G  P P     G
Sbjct: 46  APP---SGILPPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAG 92


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +3

Query: 102 PG-PKMAKXNXPPLPXFXXXPXGXFQT-KPLFPVFGGXXKFXXQKXGGPXPPFXGGXXPG 275
           PG P  +  +  P P     P    Q  +P  P  G       Q+  GP P + G   PG
Sbjct: 681 PGEPTSSTPSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPG 740

Query: 276 GKKPXXXGFFXXPPG 320
             +P     F  PPG
Sbjct: 741 AMRPPAG--FAPPPG 753


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.144    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,299,245
Number of Sequences: 27780
Number of extensions: 168122
Number of successful extensions: 264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)