Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C08
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   6.7  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   6.7  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   8.9  

>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 622 FPLEAPSCALLFRTW 666
           FPLE  +CA+ FR W
Sbjct: 177 FPLELTTCAITFRYW 191


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 622 FPLEAPSCALLFRTW 666
           FPLE  +CA+ FR W
Sbjct: 170 FPLELTTCAITFRYW 184


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 566 STLKSEVAKPDRTIKIPGVSPWKLPRALSCSEPGGYRNT 682
           STLK  +A  D  IKI G+    L    +   P G + T
Sbjct: 161 STLKELIATGDEIIKIEGIFSGTLSYIFNVWSPNGKKGT 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,533
Number of Sequences: 5004
Number of extensions: 59681
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)