Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_C06
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 166 2e-41
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 1.8
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 1.8
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.5
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 9.5
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 9.5
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 9.5
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 9.5
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 28 9.5
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 166 bits (403), Expect = 2e-41
Identities = 71/107 (66%), Positives = 95/107 (88%)
Frame = +3
Query: 117 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 296
GRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F VDIR+ V
Sbjct: 12 GRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVS 71
Query: 297 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 437
GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I YD+SLL
Sbjct: 72 GGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLL 118
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 455 RCEPKKFGGPGARARYQ 505
R E KKFGGPGARARYQ
Sbjct: 124 RRESKKFGGPGARARYQ 140
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -2
Query: 311 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 132
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 131 G 129
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -2
Query: 311 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 132
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 131 G 129
G
Sbjct: 208 G 208
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 372 YVDEASKKEIKDILVQYDRSL 434
+ DE +KE+ D+ QYDRS+
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSI 171
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 305 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 207
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 245 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 364
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 438
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 245 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 364
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 701
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 305 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 207
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 251 RQGKILYG*HQSDSQ---GWWSCSTSLRYQTSYFKGSDRLLPEIC 376
R+ +I+ H + GW S L Y+T+Y + L P+ C
Sbjct: 259 RENEIIINIHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,147
Number of Sequences: 27780
Number of extensions: 335362
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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