Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_C05
(961 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 36 0.048
12_02_0326 + 17555731-17556387 32 0.59
01_01_0929 - 7344911-7345978 32 0.59
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 31 1.4
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 1.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 30 2.4
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.1
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 30 3.1
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 29 4.2
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 4.2
08_01_0059 - 394001-394708 29 4.2
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 5.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.5
01_05_0490 + 22672241-22674679 29 5.5
12_02_0046 + 12830974-12832386 28 9.6
10_03_0023 - 7151465-7152111,7152222-7152405 28 9.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 9.6
03_05_0543 - 25404630-25405408,25405461-25405605 28 9.6
>12_02_1174 - 26696869-26698191
Length = 440
Score = 35.9 bits (79), Expect = 0.048
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 792 PPGTPXXKP-LXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P L PP PPP R P V+ P PQPP
Sbjct: 142 PPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPP 182
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P PP PP +P L P P PP
Sbjct: 187 PPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPP 226
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P PP PP +P L+ P P PP
Sbjct: 156 PPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP 195
Score = 28.7 bits (61), Expect = 7.3
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXGRXLXXNPGKTXPS 959
PP KP PP PPP +R P P P G+ +P T S
Sbjct: 288 PPEPTKPKP-PPPSPPPPPQQPSQRYWTPPPAITPEPAKPAAGKPTSSSPPSTKDS 342
>12_02_0326 + 17555731-17556387
Length = 218
Score = 32.3 bits (70), Expect = 0.59
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 825 PPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXGRXLXXNP 941
PP P P G RRP VRL P P R + P
Sbjct: 26 PPPQPDPGGKRQRRPSVRLSGSIPLPSHLPHPRRIPITP 64
>01_01_0929 - 7344911-7345978
Length = 355
Score = 32.3 bits (70), Expect = 0.59
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +3
Query: 795 PGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXGRXLXXNPGKTXPS 959
P +P K PP PPP P V L P P PP R + T P+
Sbjct: 23 PPSPPSKTRRPPPPPPPFCPHLSVPCVGLPLPPPCPPPPGAIRFPLWHGAATIPA 77
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXR 863
PP P KP PP PPP GS R
Sbjct: 930 PPPPPPGKPGGPPPPPPPPGSLPR 953
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPP--PXGSXXRRPXVRLKXXXPXPQPP 911
PP P P PP PP P G R P + P P PP
Sbjct: 269 PPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPP 310
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +3
Query: 801 TPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXGRXLXXNPGKTXPS 959
TP P+ P P P + P V P P PP G + P P+
Sbjct: 315 TPFMNPVTAPTMPSPVTNPATTPAVTNPTTMPYPYPPQQGGVMPTTPTYQPPA 367
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXN--PPPXGSXXRRPXVRLKXXXPXPQPPXXGR 923
PP P P PP PPP + P K P P PP G+
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +3
Query: 792 PPGTPXXKPLX-PPXNPPPXG-SXXRRPXVRLKXXXPXPQPPXXG 920
P G P P PP PPP G S P K P P PP G
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P PP PPP P + K P P PP
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPI--KKGAPPPAPP 390
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 801 TPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
+P P P PPP GS V + P P+PP
Sbjct: 254 SPPPSPPHPRPQPPPPGSSDLPTDVAILPSPPHPRPP 290
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXG 920
PP P P PP P P + P +R + P P PP G
Sbjct: 26 PPPPPPHPPPPPPLEPAPPST----PQLRGEASPPPPPPPPVG 64
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P P PPP P + P P PP
Sbjct: 30 PPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPPP 69
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 825 PPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP NPPP P R P P PP
Sbjct: 323 PPSNPPPAPPPPPPPPSRFNNTTPKPPPP 351
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRR-------PXVRLKXXXPXPQPP 911
PP P L PP PPP S R P + K P P PP
Sbjct: 624 PPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPP 670
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P PP PP RR V P P PP
Sbjct: 658 PPSRPAPPPPPPPQQQPPF--YPRRAVVYYTYPLPPPSPP 695
>12_02_0046 + 12830974-12832386
Length = 470
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 795 PGTPXXKPLXPPXNP-PPXGSXXRRPXVRLKXXXPXPQPP 911
P P P PP +P PP S P ++ P QPP
Sbjct: 346 PHAPRHDPFEPPPSPDPPIQSYAIDPPIQSYAMDPFEQPP 385
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 801 TPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
TP + PP P P S P + L P P PP
Sbjct: 206 TPSPPSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPP 242
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXP 902
PP P P PP PPP +P R P P
Sbjct: 106 PPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +3
Query: 801 TPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
+P P+ PP PP R P L P PP
Sbjct: 120 SPTPSPVTPPPQQPPQPEPRRPPAAPLPGVRTPPSPP 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,279
Number of Sequences: 37544
Number of extensions: 219481
Number of successful extensions: 1200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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