Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_C05
(961 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.13
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.13
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.1
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 30 2.8
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 30 2.8
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 30 2.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.8
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 29 3.7
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXGR 923
PP P P+ PP PP G R P P P PP GR
Sbjct: 264 PPPPPSVTPMPPPM-PPTPGMTPRPPPPPSSGMWPPPPPPPPGR 306
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPPXXGR 923
PP P P+ PP PP G R P P P PP GR
Sbjct: 274 PPPPPSVTPMPPPM-PPTPGMTPRPPPPPSSGMWPPPPPPPPGR 316
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 798 GTPXXKP--LXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
GTP +P + PP PPP S P P P PP
Sbjct: 599 GTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPP 638
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 798 GTPXXKP--LXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
GTP +P + PP PPP S P P P PP
Sbjct: 425 GTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPP 464
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P P NPPP G+ P V P P PP
Sbjct: 966 PPVPPREAPPIPKRNPPPLGAP---PKVPEGARAPPPLPP 1002
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P P NPPP G+ P V P P PP
Sbjct: 966 PPVPPREAPPIPKRNPPPLGAP---PKVPEGARAPPPLPP 1002
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P P NPPP G+ P V P P PP
Sbjct: 966 PPVPPREAPPIPKRNPPPLGAP---PKVPEGARAPPPLPP 1002
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 792 PPGTPXXKPLXPPX---NPPPXGSXXRRPXVRLKXXXPXPQPP 911
P G+P L PP +PPP G+ P R K P PP
Sbjct: 303 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 792 PPGTPXXKPLXPPX---NPPPXGSXXRRPXVRLKXXXPXPQPP 911
P G+P L PP +PPP G+ P R K P PP
Sbjct: 324 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 792 PPGTPXXKPLXPPX---NPPPXGSXXRRPXVRLKXXXPXPQPP 911
P G+P L PP +PPP G+ P R K P PP
Sbjct: 309 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 792 PPGTPXXKPLXPPXNPPPXGSXXRRPXVRLKXXXPXPQPP 911
PP P P PP PPP G P LK P+PP
Sbjct: 320 PPLLPPVCPPAPPPPPPPIGGLTSPPKDALKN---VPEPP 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,332
Number of Sequences: 27780
Number of extensions: 141103
Number of successful extensions: 564
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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