Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C04
         (956 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.0  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
 Frame = +3

Query: 546  PGSPRQAXXXPHSTGYRSIXGSRNINSDYAXPXSPTYQNTSXXHSEKMTPXXYTSTRPK- 722
            PG        P S  Y     S +  S    P SP+Y  TS  +S   T   Y+ T P  
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--ATSPSYSPTSPSY 1620

Query: 723  XXXCPHXRXTTXGXIPRXPA 782
                P    T+    P  P+
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPS 1640


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 540 PXPGSPRQAXXXPHSTGYRSIXGSRNINSDYAXPXSPT 653
           P P +P Q    P +   RS   S ++   Y  P SP+
Sbjct: 274 PPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPS 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,922
Number of Sequences: 5004
Number of extensions: 21123
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)