Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_C02
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       90   2e-20
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.74 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
 Frame = +2

Query: 419 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 598
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 599 GSGKTLAYILPAIVHINNQP----XIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 766
           GSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S +
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSIL 302

Query: 767 RNTCVFGGAPKXXQPGTWK-GSRNSHCYSR*IIDFLGKGPTNLXGA-XIXLDXAXR 928
           +    +GG     Q G    G          ++DF+ KG         + LD A R
Sbjct: 303 KTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADR 358


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 526 TDAHSSSRLADSYVWKEFSWRSPNGF 603
           +D+ +  +L + Y WK   +  PNG+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGY 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,273
Number of Sequences: 438
Number of extensions: 5257
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)