Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B17
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   0.55 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   0.55 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   0.55 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 174 FIFAFVFNIGLSDTAVMDMMVSTLQQQRAVTEQLRREAAIKRIPVS 311
           F+ +F+F I   D++     +   +      +++++++A+K IPVS
Sbjct: 16  FVNSFLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 174 FIFAFVFNIGLSDTAVMDMMVSTLQQQRAVTEQLRREAAIKRIPVS 311
           F+ +F+F I   D++     +   +      +++++++A+K IPVS
Sbjct: 16  FVNSFLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 174 FIFAFVFNIGLSDTAVMDMMVSTLQQQRAVTEQLRREAAIKRIPVS 311
           F+ +F+F I   D++     +   +      +++++++A+K IPVS
Sbjct: 16  FVNSFLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 212 VREAYVENKSKNKGLKLGVALH 147
           VRE  +E K KNK   L  A++
Sbjct: 459 VREKIIEEKRKNKNKNLTPAVN 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,824
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)