Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B15
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.73 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 547 PPPPPXKRXXGGGXXPPPP 491
           PPPPP     G G  PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 547 PPPPPXKRXXGGGXXPPPP 491
           PPPPP      G   PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 873 PXPPPPPPXXXGGG 832
           P PPPPPP   G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 547 PPPPPXKRXXGGGXXPPPP 491
           PPPPP      G   PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 873 PXPPPPPPXXXGGGG 829
           P PPPPPP     GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 544 PPPPXKRXXGGGXXPPPPXG 485
           P PP     GG   PPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 547 PPPPPXKRXXGGGXXPPPPXG 485
           PPPPP  R    G  P PP G
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQG 357



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 547 PPPPPXKRXXGGGXXPPP 494
           PPPPP +     G  PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 873 PXPPPPPPXXXGGGG 829
           P PPPPPP     GG
Sbjct: 946 PPPPPPPPLVSAAGG 960


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 547 PPPPPXKRXXGGGXXPPPPXGG 482
           PPPPP          PPPP  G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,544
Number of Sequences: 5004
Number of extensions: 12392
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)