Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B14
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   4.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 576 GXXPPPXPPPXXXGXGXGXXPPPP 505
           G  PPP PPP   G G    PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 566 PPPXPPPXXXXXGGXGXPPPPXXGG 492
           P P PPP     G    PPPP   G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 576 GXXPPPXPPPXXXGXGXGXXPPPP 505
           G  PPP PPP     G     P P
Sbjct: 774 GPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 575 GXXPPPXPPPXXXXXGGXGXPPPP 504
           G  PPP PPP          PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = -2

Query: 668 PPPPPPXXXXGGGGXXXXXXXXXXXXXXXXXGXXPPPXPPPXXXXXGGXGXPP 510
           PPPPPP      G                     PPP PPP     G    PP
Sbjct: 311 PPPPPPPSRRNRG--------KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 4.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 566  PPPXPPPXXXXXGGXGXPP 510
            PPP PPP     GG    P
Sbjct: 947  PPPPPPPLVSAAGGKFVSP 965



 Score = 21.0 bits (42), Expect(2) = 4.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 668 PPPPPP 651
           PPPPPP
Sbjct: 907 PPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,237
Number of Sequences: 5004
Number of extensions: 26172
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)