Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B13
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    29   0.68 
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    29   1.2  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.6  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   4.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   4.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   4.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.3  

>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 22/85 (25%), Positives = 39/85 (45%)
 Frame = +1

Query: 283 AVESKLSDVTVTAIPMSGKNVHKELGHGGSSHATISTVPASSPSSVGKDKDNGTSKYAQL 462
           ++++K + VT+   P S  +V+KE          + +V   SP +   +KD   +  A L
Sbjct: 160 SMQNKATSVTIRNTPASDFHVYKEFSDDDPIQFPLLSVDGDSPLT---EKDTNLTTPATL 216

Query: 463 LSVIEEMGKEVRPSYSGSRSSAERL 537
            +  ++     +PS S   SS  RL
Sbjct: 217 KASDQQRKVLEKPSVSKQSSSRTRL 241


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 831 KFNXFX*FHKYNLSTNTTNLTKFKCLSLNNLHILCSIHKGKIIYNXKLYYFQVYFSLL 658
           +F  F   H+   S   + LT+ +C   ++ HI CS    K      L + +  +SLL
Sbjct: 166 RFADFSPLHRNEASGALSGLTRLRCFHQDDGHIFCSPESIKDEIKNTLTFVKQVYSLL 223


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 747 NNLHILCSIHKGKIIYNXKLY 685
           N  HI CSIH G +  + KLY
Sbjct: 516 NQSHIYCSIHSGMLQDSQKLY 536


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 325 PMSGKNVHKELGHGGSSHATISTVPASSPSSVGKDKDNGTSKYAQLLSVIEEMGKEVR 498
           P S  + H  L H    +   S  P+  PS+    + N   K AQL+S  E++ + VR
Sbjct: 213 PHSSSSSHNSL-HEPVIYDFSSENPSIHPSNHLSSQKNAVLKLAQLISSFEKLPESVR 269


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 541 VSDVLLSCDYLNNWV*P--LYPSLQ*RKGVGRTWKC 440
           VS  +L+CDY N++  P  L P L       R WKC
Sbjct: 418 VSQSILACDYCNSYWHPDCLNPPLATLPSNLRKWKC 453


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 283  AVESKLSDVTVTAIPMSGKNVHKELGHGGSSHATISTVPASSPS 414
            ++    S  TVT    SG+  H     G + H T+S   ++S S
Sbjct: 3691 SISDTKSPATVTISSSSGQFTHSTFSTGSTMHNTVSHATSTSSS 3734


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +1

Query: 337  KNVHKELGHGGSSHATISTVPASSPSSVGKDKD-----NGTSKYAQLLSVIEEMGKEVRP 501
            KNV+ E+G  GS   + +    +  SS+G D D        S   Q+ +++ +    + P
Sbjct: 3615 KNVYSEVGVNGSPLESFNNSSFNEVSSLGYDHDFENRAQAVSMLCQIYAIVIQKHSSISP 3674

Query: 502  SYS 510
            + S
Sbjct: 3675 TAS 3677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,608
Number of Sequences: 5004
Number of extensions: 63927
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)