Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_B13
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-6|CAD36498.1| 108|Caenorhabditis elegans Hypothetical ... 57 1e-08
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 31 1.5
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 31 1.5
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 31 1.5
U49830-10|AAL16312.1| 463|Caenorhabditis elegans Hypothetical p... 30 2.0
U80445-10|AAB37800.1| 141|Caenorhabditis elegans Hypothetical p... 29 3.4
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 29 6.0
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 29 6.0
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 29 6.0
Z92786-4|CAB07206.1| 553|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AL021481-6|CAD36498.1| 108|Caenorhabditis elegans Hypothetical
protein Y43F4B.10 protein.
Length = 108
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +1
Query: 439 GTSKYAQLLSVIEEMGKEVRPSYSGSRSSAERLKRGIVHARILVRECLIETERSARQ 609
GT Y LL +IEE+GK+VRP+Y+ ++ + ERLKR I A++L+R C E E ++
Sbjct: 22 GTPYYEVLLKLIEEIGKDVRPTYTFNKLTCERLKRNIQAAKVLIRACQQEAETDKKK 78
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 424 SQQRMARKPELLRWSRDCYHHDPAPCV 344
++ R A K EL WS DC HD AP V
Sbjct: 96 NETRAAIKKELKTWSADCVLHDGAPNV 122
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 424 SQQRMARKPELLRWSRDCYHHDPAPCV 344
++ R A K EL WS DC HD AP V
Sbjct: 96 NETRAAIKKELKTWSADCVLHDGAPNV 122
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 424 SQQRMARKPELLRWSRDCYHHDPAPCV 344
++ R A K EL WS DC HD AP V
Sbjct: 96 NETRAAIKKELKTWSADCVLHDGAPNV 122
>U49830-10|AAL16312.1| 463|Caenorhabditis elegans Hypothetical
protein C33F10.8 protein.
Length = 463
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 424 KDKDNGTSKYAQLLSVIEEMGKEVRPSYSGSRSSAERLKRGIVHARILVRECLIETERS 600
K K N S AQL+ V + G + P+ G + + E L + H R E E++
Sbjct: 58 KKKKNAASPNAQLIPVAKSPGNDKSPAGFGRKKAGENLNEVMKHLRAPTPRAQQELEKT 116
>U80445-10|AAB37800.1| 141|Caenorhabditis elegans Hypothetical
protein C50F2.7 protein.
Length = 141
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 274 DIQAVESKLSDVT--VTAIPMSGKNVHKELGHGGSSHATISTVPASSPSSVGKDKDNGTS 447
D + E+ LSD + +T+ S + E G+ ++T+++ SPSSVG +S
Sbjct: 21 DSSSSENLLSDKSSNITSADASDGKLQIEEQFDGNDNSTVTSNGTKSPSSVGSSLPTSSS 80
Query: 448 KYAQLLSVIEEMGKEVRPSYS 510
++ + + GK PS++
Sbjct: 81 G-PEIKTTTPKSGKPRAPSFT 100
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 515 LPE*LGLTSLPISSITERSWAYLEVPLS 432
LP+ L L ++ I E SWAY +PLS
Sbjct: 277 LPKVLHLLEKTVNVIAEESWAYQHLPLS 304
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 515 LPE*LGLTSLPISSITERSWAYLEVPLS 432
LP+ L L ++ I E SWAY +PLS
Sbjct: 279 LPKVLHLLEKTVNVIAEESWAYQHLPLS 306
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 515 LPE*LGLTSLPISSITERSWAYLEVPLS 432
LP+ L L ++ I E SWAY +PLS
Sbjct: 277 LPKVLHLLEKTVNVIAEESWAYQHLPLS 304
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 515 LPE*LGLTSLPISSITERSWAYLEVPLS 432
LP+ L L ++ I E SWAY +PLS
Sbjct: 279 LPKVLHLLEKTVNVIAEESWAYQHLPLS 306
>Z92786-4|CAB07206.1| 553|Caenorhabditis elegans Hypothetical
protein F47H4.7 protein.
Length = 553
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/93 (22%), Positives = 41/93 (44%)
Frame = +1
Query: 304 DVTVTAIPMSGKNVHKELGHGGSSHATISTVPASSPSSVGKDKDNGTSKYAQLLSVIEEM 483
D+ + P S +H ++ + + PS+ DKD+ Y QL +I+++
Sbjct: 115 DINLELEPRSLAEMHNDIMKNIVRELNSQSANSPGPSARHHDKDDDFPAYNQLKELIQKL 174
Query: 484 GKEVRPSYSGSRSSAERLKRGIVHARILVRECL 582
+ P+ + A ++ R ++ IL ECL
Sbjct: 175 KDKQTPAKAEPAKQA-KINRKVLCGYILF-ECL 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,540
Number of Sequences: 27780
Number of extensions: 352115
Number of successful extensions: 945
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -