Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B10
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    30   0.50 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.66 
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    29   1.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   2.7  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    26   8.1  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   8.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   8.1  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   8.1  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 53  ILSXLAYCERLHXSRQHVAFYXN-ERLIEREKKNTKIRKLSYIYDSFRLIVVDVLNRKTD 229
           +L+ +AYC++L  + Q  A + N E+ ++    N      S I    RL   ++L  K +
Sbjct: 108 LLAAIAYCQKLSGTNQADALWKNVEKDLKETLDNVDFDARSKILQDLRLEYAEILLTKFN 167

Query: 230 FQ 235
           F+
Sbjct: 168 FE 169


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 577 SRPRTLQRYHTSDHIYERSAYRKHKHEHYQLMTKSPSYDGHPKFKVSVTD--SPTISLTP 750
           S  RT + Y    H  ++S++ KH H H +  + S  +  + K  VS+T   +P+I+   
Sbjct: 535 SEIRTTKIYKAQQH-KQKSSHHKH-HHHKKSKSSSSKHKENDKASVSITTTTTPSITPAD 592

Query: 751 PIAWS 765
           P+  S
Sbjct: 593 PVPTS 597


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 274 DSENNTTDSTCYRLKIGFTIQNIDDDQPERII 179
           DSE++  DS  ++L+IG   ++   D+P+ II
Sbjct: 256 DSEDDNLDSNNFQLEIGTEAKSAAPDEPQEII 287


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
 Frame = +1

Query: 421  DQPKDLRNRRIMIAGVINMLEVPDNVSEASFVTSVEESCRVDQCTQTPPSGKSRPRTLQR 600
            D+ +++ N         + L+VP N S +S  T  +E  R+D  + T  S  S PR+   
Sbjct: 1306 DEEEEIENAEQSPDWASSTLQVPFNASSSSLATPKKEPLRLDTNSLTLTS--SMPRSFTP 1363

Query: 601  YHT----------SDHIYERSAYRKHK 651
             +T          SD I  R  Y  H+
Sbjct: 1364 SYTPSFLEGSPVFSDEILNRGEYMPHR 1390


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +1

Query: 391 YIKYRKEYCGDQPKDLRNRRIMIAGVINMLEV------PDNVSEASFVTSVEESCRVDQC 552
           +I Y  +Y  +     +   I++ G+   L +      PDN S A F+T  E    VD+ 
Sbjct: 231 FIAYGVQYAKNTISPWKLFMIIVGGITFFLTIGLFFYYPDNTSTARFLTKKERLYTVDRV 290

Query: 553 TQTPPSGKSRPRTLQRY 603
            ++  SG    +T ++Y
Sbjct: 291 RRSNHSG-IESKTFKKY 306


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 250 STCYRLKIGFTIQNIDDDQP 191
           ST Y L + F+I  +DDDQP
Sbjct: 119 STNYGLAVAFSIVPMDDDQP 138


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 741 PNASHSLEYVCPRGGTSPHGST 806
           P  +  +   CPR GTSP+G T
Sbjct: 140 PGGTIPIPESCPREGTSPYGRT 161


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 1   HXFSLXSHYRESLRFLDYSFXFGLLRTAAPVAAARRLLSERKINRERKKKH 153
           H   +   Y  S++F      FGLL         + L S  K N E KKKH
Sbjct: 346 HCVPIIEIYDTSIKFYMKHGRFGLLEKVCESWTKQFLGSLEKQNNEVKKKH 396


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 718 VTDSPTISL--TPPIAWSTFALVGVPAPTXVP 807
           ++D P   +  T  + W TF ++  PAP   P
Sbjct: 581 ISDDPNAQIKNTDIVVWHTFGMIHFPAPEDFP 612


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 646 HKHEHYQLMTKSPSYDGHPKFKVSVTDSPTISLTPPIAW 762
           + +EH  L T S SY  HP  + S   SP    T  +A+
Sbjct: 38  YHYEHIHLFTSSQSYMYHPNARFSY--SPFCCFTDTLAY 74


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 568 SGKSRPRTLQRYHTSDHIYERSAYRKHKHEHYQLMTKSPSYDGHP 702
           SG   PR  + Y   +H+ ERS  R    +     + S     HP
Sbjct: 35  SGNEAPRESRYYRKEEHLQERSRSRSPARDSRWKSSSSGFAPAHP 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,306
Number of Sequences: 5004
Number of extensions: 73145
Number of successful extensions: 257
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)