Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_B10
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0248 + 2041015-2041762,2042112-2042149 32 0.70
05_03_0455 + 14234908-14235014,14235206-14235392,14235628-142363... 31 1.6
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 2.1
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 30 2.8
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 29 4.9
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 6.5
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781 29 6.5
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 29 6.5
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 8.6
>01_01_0248 + 2041015-2041762,2042112-2042149
Length = 261
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 661 YQLMTKSPSYDGHPKFKVSVTDSPT-ISLTPP 753
+ L + P+Y GHP F V+ D PT + TPP
Sbjct: 40 FWLRGRQPAYCGHPTFAVTCDDDPTGATATPP 71
>05_03_0455 +
14234908-14235014,14235206-14235392,14235628-14236395,
14236455-14236758,14236924-14236991
Length = 477
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 369 DRQLCSHLYQIQERVLWRPA*RPSQPSNYDSRRNQYVGGTRQCFGGEL 512
+R LC+ L + VLW+ ++ S S+ + YV +CF +L
Sbjct: 398 NRMLCTKLRHMFNEVLWKMVPDEAKQSKISSQSDDYVREEGECFSSKL 445
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 562 PPSGKSRPRTLQRYHTSDHIYERSAYRKHKHEH-YQLMTKSPSYDGHPKFKVSVTDSPTI 738
PPS SR ++ +S H E S++ K HEH Q + KS S PK V + ++
Sbjct: 831 PPSRSSRSHSIGTDRSSTH--EGSSHSKKHHEHDSQSLHKSKSVPNIPKDHVCTVEELSV 888
Query: 739 SL 744
+
Sbjct: 889 KV 890
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 652 ACVSCTQISRRCGQKCDTFVRCVACFFRSVGSEYIG 545
+CV+C +S KC F+ V C SVGS+++G
Sbjct: 608 SCVACGALS-----KCHRFLGSVQCMCSSVGSKFVG 638
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 604 HTSDHIYERSAYRKHKHEHYQLMTKSPSYDG 696
H S YE ++H+HE+YQ+ + +G
Sbjct: 438 HKSHDAYETERSKRHEHEYYQMQPNNTEPEG 468
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +3
Query: 417 WRPA*RPSQPSNY-----DSRRNQYVGGTR-QCFGGELRDKRGG 530
W P P PS DS+ + G T Q F GELR+KRGG
Sbjct: 1403 WTPQFAPGNPSEVLVTSADSQIRVFDGVTMVQKFRGELREKRGG 1446
>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
Length = 389
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -1
Query: 585 WPAFSARWGLSTL--VNSTRLLHACHEARLRNIVWYLQHIDYAGYHNSTVAKVF 430
WP G T V++T L ACH R + W L DYAG VA F
Sbjct: 185 WPRTVFLVGAMTCLAVSATAHLLACHSRRFSRLFWQL---DYAGIAVMIVASFF 235
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 568 SGKSRPRTLQRYHTSDHIYERSAYRK 645
SG SRP T+QR H S + RS+ K
Sbjct: 573 SGSSRPSTMQRLHQSTGLETRSSLTK 598
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 541 VDQCTQTPPSGKSRPRTLQRYHTSDHIYERSAYRKHKHEHYQLMTKSPSYDGHPKF 708
++QC PP + RPR + S ER Y H +H++ + +D F
Sbjct: 1265 INQCPYRPPEPQQRPRPWS--NNSSSYPERYRYDGHDRDHHRHDRRHHGHDRRHHF 1318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,167,286
Number of Sequences: 37544
Number of extensions: 502532
Number of successful extensions: 1351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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