Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B10
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 481 EVPDNVSEASFVTSVEESCRVDQCTQTPPSGKSRPRTLQRYHTSDH 618
           ++PD     SFV  V  +         PP  +++ +    YH SDH
Sbjct: 231 KLPDTSMAKSFVRKVHAT--------KPPKPQTKTKPTSPYHVSDH 268


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 735 DLPNASHSLEYVCPRG-GTSPH--GSTHRTGSR 824
           D+ N SH + Y  P+G     H  G T R G+R
Sbjct: 516 DIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNR 548


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 665 W*CSCLCFLYADL 627
           W   C+CF+YA L
Sbjct: 366 WDGVCMCFIYASL 378


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 665 W*CSCLCFLYADL 627
           W   C+CF+YA L
Sbjct: 335 WDGVCMCFIYASL 347


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 665 W*CSCLCFLYADL 627
           W   C+CF+YA L
Sbjct: 386 WDGVCMCFIYASL 398


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 665 W*CSCLCFLYADL 627
           W   C+CF+YA L
Sbjct: 335 WDGVCMCFIYASL 347


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 492 VWYLQHIDYAGYHN 451
           VW  Q I YAGY N
Sbjct: 185 VWNHQLISYAGYKN 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,266
Number of Sequences: 438
Number of extensions: 5541
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)