Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B07
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           37   0.024
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.2  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    29   3.7  
03_06_0149 - 31987183-31987630,31987813-31987874                       29   4.9  
12_02_1188 + 26801833-26802225                                         29   6.4  
04_03_1035 - 21887562-21890030                                         29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
01_03_0308 - 14883728-14884120                                         28   8.5  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 722 RKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 615
           R R   RR  GG+V+G+   R+RR   GA++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 539 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 685
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 670 RLPDTCPPFSLREAWRFLIA-----HAVGISVRCRSS 765
           RL D C P  L+E WRFL+A      A   S RC++S
Sbjct: 849 RLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKAS 884


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 728 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 618
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 692 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 594
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>04_03_1035 - 21887562-21890030
          Length = 822

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 758 LHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGE 624
           ++R  +P    +  + A RR+ GG  S       R  HE AF  E
Sbjct: 493 VYRASLPDGREVAIKRAERRDTGGPSSSSAAAARRVDHEAAFVSE 537


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 598 DRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREAWR 717
           +R  +I G    + PS A L+R    C    +CPP    E WR
Sbjct: 65  ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,310,300
Number of Sequences: 37544
Number of extensions: 518089
Number of successful extensions: 1527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)