Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B07
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.52 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 475 SHVLSCVIPLILWITVLPPLSELIPLAA 392
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 774 WAVFXNPPFSPTXAP 818
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 755 VGRPLQLGCXXXPPVQPDRCALSGT 829
           +G P+ LG    P   PD+C    T
Sbjct: 317 IGSPIVLGLNNTPDRTPDQCLFYNT 341


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 496 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 398
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 719 KRHASRREKGGQVSGKRQGRNRRAH 645
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 745 SVRCRSSAPAGLXSXTPRSARPXRLIRYYSS 837
           +V CR+S P G+   +  +AR  + +  Y +
Sbjct: 711 NVMCRTSGPRGVAIVSASTARSEQFLCRYEA 741


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 475 SHVLSCVIPLILWITVLPPLSELIPL 398
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,550
Number of Sequences: 438
Number of extensions: 5507
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)