Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B06
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.008
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 436 SPXXGGGXAPPPPXXXXXGGPPPPP 510
           +P  GG   PPPP      GPPPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 439 PXXGGGXAPPPPXXXXXGGPPPPP 510
           P       P PP     GGPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 398 TPXXXXXXXPGGXPPXXGGGGXPPPHXXXXGGXPPPP 508
           TP       P   P   G    PPP      G PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 605 PPXXXXFFFSXPPXGPPXXSXXXTXPPPPP 694
           PP         PP  PP  +     PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 466 PPPXXXXXGGPPPPP 510
           PPP     G PPPPP
Sbjct: 752 PPPAPIMGGPPPPPP 766



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 503 GGGPPXXXXXGGGGAXPPPXXGDXP 429
           GG PP     G  GA PPP     P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 508 GGGGXPPXXXXVGGGXPXPPP 446
           GG   PP    V G  P PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 424 PXGXS-PXXGGG-XAPPPPXXXXXGGPPP 504
           P G + P  G G  APPPP     G PPP
Sbjct: 114 PVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 3.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 654 PXLLXXPXXPPPPP 695
           P ++  P  PPPPP
Sbjct: 899 PTIITHPTPPPPPP 912



 Score = 21.4 bits (43), Expect(2) = 3.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 672 PXXPPPPPXGAP 707
           P  PPPPP   P
Sbjct: 942 PAFPPPPPPPPP 953


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 463 PPPPXXXXXGGPPPPP 510
           PPPP       PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 638 PPXGPPXXSXXXTXPPPPP 694
           PP  PP      + PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 638 PPXGPPXXSXXXTXPPPPP 694
           PP  PP        PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 604 PPPXXXFFFLXXARXPAXXFXXXHXPPPPPP 696
           PPP    F    A  PA      + PPPPPP
Sbjct: 167 PPPS---FQPPSAAAPATSLPSDYNPPPPPP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,769
Number of Sequences: 5004
Number of extensions: 24200
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)