Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_B05
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.13
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.13
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.13
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.51
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.51
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.51
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.0
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 30 2.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 892 PPXXPFXGXGPF-GAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPPXXXXG 740
PP P G P G G PPI G PPP G PPPP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Frame = -3
Query: 830 PGLPPDXXGXXXXPPXG------GGXXXPPPXXXXXGXFFXXXXXXXGPKNQPPXPXGXA 669
PGLPP G PP G GG PPP P PP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 668 VFLXXKXPPXXPP 630
PP PP
Sbjct: 777 PGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 892 PPXXPFXGXGPF-GAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPPXXXXG 740
PP P G P G G PPI G PPP G PPPP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Frame = -3
Query: 830 PGLPPDXXGXXXXPPXG------GGXXXPPPXXXXXGXFFXXXXXXXGPKNQPPXPXGXA 669
PGLPP G PP G GG PPP P PP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 668 VFLXXKXPPXXPP 630
PP PP
Sbjct: 777 PGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 892 PPXXPFXGXGPF-GAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPPXXXXG 740
PP P G P G G PPI G PPP G PPPP G
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Frame = -3
Query: 830 PGLPPDXXGXXXXPPXG------GGXXXPPPXXXXXGXFFXXXXXXXGPKNQPPXPXGXA 669
PGLPP G PP G GG PPP P PP P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 668 VFLXXKXPPXXPP 630
PP PP
Sbjct: 360 PGGFKGGPPPPPP 372
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +1
Query: 757 GGGXXXPPPXGGXXXSPXKSGGNP----GKXIFXKXPQKAXTXKXAGLGG 894
GG PPP GG +P GGN G+ F + PQ + G GG
Sbjct: 123 GGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSEAPQGFGNNQQGGFGG 172
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +1
Query: 739 PXXXXXGGGXXXPPPXGGXXXSPXKSGGNP----GKXIFXKXPQKAXTXKXAGLGG 894
P GG PPP GG +P GGN G+ F PQ + G GG
Sbjct: 59 PQQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSGAPQGFGNNQQGGFGG 114
Score = 31.5 bits (68), Expect = 0.88
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 829 RGYPPIXGEXXXPPPXGXGXXPPP 758
+G PP+ G PPP G PPP
Sbjct: 244 KGSPPLAGSGSPPPPPAAGSPPPP 267
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 892 PPXXPFXGXGPFGAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPP 755
PP P G P G+ PP G PPP G G PPPP
Sbjct: 298 PPPPPPRGSPPTGSLP--------PPQAG--GSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +1
Query: 757 GGGXXXPPPXGGXXXSPXKSGGNP----GKXIFXKXPQKAXTXKXAGLGG 894
GG PPP GG +P GGN G+ F + PQ + G GG
Sbjct: 144 GGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSEAPQGFGNNQQGGFGG 193
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +1
Query: 739 PXXXXXGGGXXXPPPXGGXXXSPXKSGGNP----GKXIFXKXPQKAXTXKXAGLGG 894
P GG PPP GG +P GGN G+ F PQ + G GG
Sbjct: 80 PQQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSGAPQGFGNNQQGGFGG 135
Score = 31.5 bits (68), Expect = 0.88
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 829 RGYPPIXGEXXXPPPXGXGXXPPP 758
+G PP+ G PPP G PPP
Sbjct: 265 KGSPPLAGSGSPPPPPAAGSPPPP 288
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 892 PPXXPFXGXGPFGAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPP 755
PP P G P G+ PP G PPP G G PPPP
Sbjct: 319 PPPPPPRGSPPTGSLP--------PPQAG--GSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +1
Query: 757 GGGXXXPPPXGGXXXSPXKSGGNP----GKXIFXKXPQKAXTXKXAGLGG 894
GG PPP GG +P GGN G+ F + PQ + G GG
Sbjct: 129 GGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSEAPQGFGNNQQGGFGG 178
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +1
Query: 739 PXXXXXGGGXXXPPPXGGXXXSPXKSGGNP----GKXIFXKXPQKAXTXKXAGLGG 894
P GG PPP GG +P GGN G+ F PQ + G GG
Sbjct: 65 PQQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSGAPQGFGNNQQGGFGG 120
Score = 31.5 bits (68), Expect = 0.88
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 829 RGYPPIXGEXXXPPPXGXGXXPPP 758
+G PP+ G PPP G PPP
Sbjct: 250 KGSPPLAGSGSPPPPPAAGSPPPP 273
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 892 PPXXPFXGXGPFGAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPP 755
PP P G P G+ PP G PPP G G PPPP
Sbjct: 304 PPPPPPRGSPPTGSLP--------PPQAG--GSPPPAGTGSPPPPP 339
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -1
Query: 880 PFXGXGPFGAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPPXXXXG 740
P G P G K F PP+ PPP G PPPP G
Sbjct: 47 PPSGILPPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGG 93
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 820 PPIXGEXXXPPPXGXGXXPPPPXXXXG 740
PP G PPP G PPPP G
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPPPMMGG 103
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/72 (30%), Positives = 24/72 (33%)
Frame = +2
Query: 614 FFXPXPGGXXXXFSXLKKPPTPXXRGVGFWAPLPFXPPKKXXPXXXXXGGGXGSXPPXGG 793
F P GG + PP+P G G LP PP GGG G PP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPSPCGCGGGGGLALPQLPPLS----LPSLGGGGGCCPPPAP 72
Query: 794 XXXLPXNRGVTP 829
GV P
Sbjct: 73 ACGGGCGGGVAP 84
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 889 PXXPFXGXGPFGAXX*KXFFRGYPPIXGEXXXPPPXGXGXXPPPP 755
P P GP A G PP G PP G PPPP
Sbjct: 121 PACPPPCFGPACAPSAPIIVNGPPPCFGPACPPPCFGPACAPPPP 165
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Frame = +2
Query: 668 PPTPXXRGVGFWAPLPFXP----PKKXXPXXXXXGGGXGSXPPXGGXXXLPXNRGVTPEK 835
PP P GVG P P P K P G G+ PP G P + P +
Sbjct: 716 PPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPR 775
Query: 836 XFLXXGPKRPXPXKXXXWGVFXRAPPP 916
+ P P P G PPP
Sbjct: 776 GGMHHMP--PPPSFRGGRGGHGGPPPP 800
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 823 YPPIXGEXXXPPPXGXGXXPPPP 755
YPP PP G G PPPP
Sbjct: 363 YPPPPPSRPPAPPSGHGMIPPPP 385
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 830 PGLPPDXXGXXXXPPXGGGXXXPPP 756
PG+PP PP GG PPP
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 823 YPPIXGEXXXPPPXGXGXXPPPP 755
YPP PP G G PPPP
Sbjct: 373 YPPPPPSRPPAPPSGHGMIPPPP 395
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 830 PGLPPDXXGXXXXPPXGGGXXXPPP 756
PG+PP PP GG PPP
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPP 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,786
Number of Sequences: 27780
Number of extensions: 217445
Number of successful extensions: 895
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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