Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_B03
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   380   e-108
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   2.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.6  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  380 bits (935), Expect = e-108
 Identities = 173/204 (84%), Positives = 189/204 (92%)
 Frame = +2

Query: 89  RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 268
           RDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGN
Sbjct: 5   RDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGN 64

Query: 269 FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 448
           FSWGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LPLGRK
Sbjct: 65  FSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRK 124

Query: 449 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGR 628
           +GAKLTEAEE ++NKKRS+K   KY ARQR AKVE AL EQF TGR+LAC++SRPGQCGR
Sbjct: 125 RGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGR 184

Query: 629 ADGYILEGKELEFYLRKIKSKRAK 700
            DGYILEGKELEFY+R+IKSK+AK
Sbjct: 185 EDGYILEGKELEFYMRRIKSKKAK 208


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 385 YNNCILDKGLCT 350
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 385 YNNCILDKGLCT 350
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 93  SLTNTHLSWVKKRPTKKS 40
           +LT   L+W KKR TK S
Sbjct: 214 NLTMVKLNWPKKRVTKMS 231


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 385 YNNCILDKGLCTHQ 344
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 385 YNNCILDKGLCTHQ 344
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 418 LIPLPEWSCIYYNNC 374
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 418 LIPLPEWSCIYYNNC 374
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 418 LIPLPEWSCIYYNNC 374
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,480
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)