Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A23
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0455 - 3458432-3458574,3458768-3460619                           29   5.3  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   7.0  

>07_01_0455 - 3458432-3458574,3458768-3460619
          Length = 664

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = +2

Query: 200 PPXLIRSVHYMLREXXLXAYACARALPDXRTXQPSSXTGDPRHPHDDSGDSG 355
           P   +R V        +   A +RA+P      P      PRH  DD G  G
Sbjct: 41  PSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDG 92


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 299 PSSXTGDPRHPHDDSGDSGKE 361
           PSS +G   H HDD GD  +E
Sbjct: 240 PSSRSGATNHHHDDDGDGDEE 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,040,585
Number of Sequences: 37544
Number of extensions: 240184
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)