Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A23
         (935 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020947-1|AAH20947.1|  277|Homo sapiens transmembrane protein 5...    31   8.0  
BC002867-1|AAH02867.2|  277|Homo sapiens transmembrane protein 5...    31   8.0  

>BC020947-1|AAH20947.1|  277|Homo sapiens transmembrane protein 55B
           protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 407 GRCTRSGDRTXDXXLTLSRCXHCRHVGGVDLRXXRKVGPCGNLAG 273
           G C  +   T     TL+RC HCR V  +  R  RK   C  L G
Sbjct: 175 GHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYTRKRCICCFLLG 219


>BC002867-1|AAH02867.2|  277|Homo sapiens transmembrane protein 55B
           protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 407 GRCTRSGDRTXDXXLTLSRCXHCRHVGGVDLRXXRKVGPCGNLAG 273
           G C  +   T     TL+RC HCR V  +  R  RK   C  L G
Sbjct: 175 GHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLG 219


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,537,769
Number of Sequences: 237096
Number of extensions: 1263986
Number of successful extensions: 1870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)